Theileria orientalis: TOT_020000507
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Entry
TOT_020000507 CDS
T03460
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tot
Theileria orientalis
Pathway
tot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TOT_020000507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tot03019
]
TOT_020000507
03041 Spliceosome [BR:
tot03041
]
TOT_020000507
03009 Ribosome biogenesis [BR:
tot03009
]
TOT_020000507
03016 Transfer RNA biogenesis [BR:
tot03016
]
TOT_020000507
Enzymes [BR:
tot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TOT_020000507
Messenger RNA biogenesis [BR:
tot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
TOT_020000507
Spliceosome [BR:
tot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TOT_020000507
Complex C
U4/U6.U5 tri-SnRNP related factors
TOT_020000507
Ribosome biogenesis [BR:
tot03009
]
Eukaryotic type
Pre-60S particles
Helicases
TOT_020000507
Transfer RNA biogenesis [BR:
tot03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
TOT_020000507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
nSTAND3
DUF5344
Swi5
Motif
Other DBs
NCBI-GeneID:
20714650
NCBI-ProteinID:
XP_009690547
UniProt:
J4C3D4
LinkDB
All DBs
Position
2:complement(join(1054883..1055018,1055059..1055243,1055510..1055855,1055886..1055963,1056013..1056066,1056126..1056433,1056550..1056992,1057113..1058585,1058722..1058770))
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AA seq
1023 aa
AA seq
DB search
MGDPLSMFEVFETEDQVMEDSQDSTKRPKHGEKFTDASSYLSNMNYNDDYLLNYTTSPLT
TSVKVEKIHSSHNCSHYRVAPSDSNYSPRKIEKYAKTYPFTLDEFQKRSIESLEMNESVL
VCAHTSAGKTVVAEYAIAMGLRDGHRIIYTSPIKALSNQKYRNLSDEFVDVGLMTGDVTL
NPTASVMVMTTEILRSMLYRGSEIVQEMKCVIFDEVHYMRDLERGVVWEETIILIPSQVN
LVFLSATIPNYLEFSEWITRIKNVPCNVVSTDFRPVPLNHYLYMSGGEGIYLVLDEDNNF
KSSNYNKCLASGPSSSASKDRDTKGRDKKRGSAAYRDIESIVKLCFEKSLTPCIIFSFSK
SECETLATSVRNLDMTTDEEKKLVDEIYKNAMATLSEQDRLLPQNLFMLPLLKRGIGIHH
GGLLPIIKEIIEILFQESLLKVLFSTETFSMGLNMPAKTVVFTSLKKWDGREVRYISSGE
YIQMSGRAGRRGLDTIGVVIIMVDGNDPLVEQEVKKIFLGKPLNLDSTFHLGYNMLLNLM
RIEDTTPEYLIERSFMQFQMKNKSADITSKMNEAKANMEDLRNSFNSELLVQMSSLHDNI
ARLEELDELIIKMVMKDAKALNYFNLGRLVYVKDDQDWGWGLCVSSPKLRAPKYKTTKTY
HVDIVLPVKREGDKVMPSHVAEATYTIKSFGIDCVKKMSQIRVTINEKVDKSDTAFQSSM
YQKFSLLFEHIKKVKEPPLLDPVEHMKIDNPELESNLSYASMYTLHKSLEGKDVILVSKE
LRSQIDSSPLLSREDYDTILKKYEDYVKVKEEFEEHQKKLQECTQIIMKDELRHMKTVLR
KLEYVDQFGIVTIKGRIACEINASDELLVAELFLRNFFEKMEPEQICASLSCLVNDDRKE
AKLPTELKLLESYNKIREIATEIVEVMVECDILVDEVEYVNKLRPTLMSVVYRWAKGDPF
IEILSDSSVFEGSVIRCIRRLDELLRQLACASRNIGNITMEEIFLTCISKLKKGIAFTSS
LYL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatcctttatcaatgttcgaagtcttcgaaacagaagaccaagtaatggaggat
tcgcaagactctacgaagcgaccgaagcacggagaaaagtttaccgacgcaagctcgtac
ctgtcgaatatgaactataacgacgactacttgttaaattataccacctcgcccctaaca
acgagcgttaaagtcgaaaagatacactcttcacacaattgctcacattacagagtggcg
ccctcggatagcaactactctccgaggaaaattgagaaatacgcgaaaacgtacccgttc
acactagatgagttccaaaagaggtcgatcgagtcgctggaaatgaacgagtcggtgctg
gtgtgcgcacatacgtcagcagggaagacagtggtggcggagtacgcaatagcaatgggc
ctgagagacggccacagaatcatatacacgtcgccaatcaaggcgctcagtaaccagaag
tacaggaacctgtcggacgagttcgtggacgtgggcctgatgacgggagacgtgacgctt
aatccgacggcctcagtgatggtgatgaccacggaaatactgagaagcatgctctacaga
ggaagcgagatcgtgcaggagatgaagtgcgtgatcttcgacgaagtgcactacatgagg
gacctggagagaggagtggtctgggaggagacgatcatcctgatcccgagtcaagttaac
ctggtcttcctgtcggcgacgatcccgaactacctggagttctcggagtggatcacgagg
atcaaaaacgtgccctgcaacgtggtgagcacggacttcaggccagtgccgctgaaccac
tacctctacatgtcgggaggggaggggatatatttggtgctggacgaggacaacaacttc
aagtcgagcaactacaacaagtgcctggcgagtggaccgagttcgagcgcgtcgaaggac
agggacacgaaggggcgcgacaaaaagaggggctccgccgcctacagagacatcgagagc
atcgttaagctgtgcttcgaaaagagcctgacgccctgcatcatcttctccttcagcaag
tcggagtgcgaaactctggcgacgtcagtgaggaacctggacatgaccacggacgaggag
aagaagctggtcgacgagatatacaagaacgcaatggcgacgctgagcgagcaggaccga
ctgctgccgcagaacctgttcatgctgccgctgctgaagcgaggaatcggaatacaccac
ggagggctcctgccgataatcaaggagatcatcgagattctcttccaggagtcgctcctg
aaggtgctcttcagcacggaaaccttcagcatgggccttaacatgccggcgaagacggta
gtcttcacgagcctgaagaagtgggacggcagagaggtccgctacatctcctcgggagag
tacatacagatgtcagggagagcgggaagaagaggactcgacacaataggagtggtcatc
atcatggtggacggaaacgacccactcgtcgagcaggaggttaagaaaatatttctggga
aagccacttaacctggattctacgttccacctgggatacaacatgctcctgaacctgatg
agaatagaggacacgacgccagagtacctgatcgagaggtcgttcatgcagtttcaaatg
aaaaataagtcggcagatataacctcgaagatgaatgaggcgaaggcgaacatggaagac
ctgaggaacagcttcaactcagagttgttagtgcaaatgtcctcgctgcacgacaacata
gcaaggctggaagagctggatgaactgataattaaaatggtcatgaaggacgcgaaggcg
ctcaactacttcaacctgggaaggctagtatacgtgaaggatgaccaggattggggttgg
ggtctgtgtgtatcatcaccgaagttaagagcgccaaaatataagaccacaaagacatac
cacgttgacattgtgcttccagtaaaaagggaaggagataaagttatgccatcgcacgtt
gcagaggcaacctacacgatcaagtcatttggaattgactgcgttaagaaaatgtcacaa
atcagagtgaccataaatgaaaaggtggacaaaagcgatacagcatttcagtcgtcaatg
taccagaagtttagcctgctctttgaacacattaaaaaagtaaaggagccgccgctgttg
gacccagtggagcacatgaaaatagataacccagagctggagagtaacctaagttatgct
agtatgtacacgctgcataagagccttgaagggaaggatgtgatattagtatcgaaggag
cttaggtcccaaatagactcttcgccactgctgtcaagggaagattacgatacgatttta
aaaaaatatgaggactacgtaaaagttaaagaggagtttgaggagcaccaaaagaagttg
caagagtgcacgcaaataatcatgaaggatgagctgaggcacatgaagacagtgctgagg
aagctggagtacgtggaccagttcggaatagtgacgatcaagggaagaatagcgtgcgaa
atcaacgcgtcagacgagttgctggtagcagagctgttcctgagaaacttctttgaaaag
atggagccggagcagatatgcgcatcactgagttgtctggtaaacgacgataggaaggag
gcgaagttgccaacagaactcaaattgctggaatcgtacaacaagatcagagaaatcgca
acggaaatagtggaagtcatggtggagtgtgacatcctagtggatgaagtggaatacgta
aacaaactgaggccgacgctgatgtcagtagtgtacagatgggcaaaaggagaccccttc
atagaaatactgtcagactcctcagtgtttgaaggatcagtgatcaggtgcataaggagg
ctggacgaactcttgagacagctggcatgtgcgtccagaaacataggaaacataacgatg
gaggaaatattcctaacgtgtatttctaagcttaagaaggggatcgcattcacgtcgtca
ctgtacctgtaa
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integrated database retrieval system
