KEGG   Theileria orientalis: TOT_030000136
Entry
TOT_030000136     CDS       T03460                                 
Name
(RefSeq) U6 snRNA-associated sm-like protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
tot  Theileria orientalis
Pathway
tot03018  RNA degradation
tot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TOT_030000136
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TOT_030000136
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tot03019]
    TOT_030000136
   03041 Spliceosome [BR:tot03041]
    TOT_030000136
Messenger RNA biogenesis [BR:tot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TOT_030000136
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TOT_030000136
Spliceosome [BR:tot03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TOT_030000136
SSDB
Motif
Pfam: LSM RimP_C
Other DBs
NCBI-GeneID: 20715334
NCBI-ProteinID: XP_009691176
UniProt: J4D8N0
LinkDB
Position
3:complement(join(307166..307260,307305..307376,307481..307583))
AA seq 89 aa
MTAPGKSFRDAKSVINLNKHLNKEVYVKFSGGREVKGVLKGHDAMSNLVLDDTVELLRSI
DDPSTLSGETRNLGLLVARGTSVSFERLN
NT seq 270 nt   +upstreamnt  +downstreamnt
atgactgctcctggcaagtcttttagagatgcgaaaagcgttattaacttaaataaacat
ttgaataaggaagtatatgtaaaatttagcggaggcagagaagtcaaaggagtcctgaaa
ggccatgacgcaatgtccaacttagttttagatgacactgtggaattgctaagaagtatt
gatgatccgagtacattatcaggggagacgagaaaccttggacttctagtggctcgcgga
acttcagtaagtttcgagagattaaactaa

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