KEGG T03460: TOT

Theileria orientalis: TOT_030000312

Entry

TOT_030000312     CDS       T03460

Name

(RefSeq) U6 snRNA-associated sm-like protein lsm4

K12623

U6 snRNA-associated Sm-like protein LSm4

Organism

tot Theileria orientalis

Pathway

tot03018

RNA degradation

tot03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:tot00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TOT_030000312
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TOT_030000312
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tot03019]
    TOT_030000312
   03041 Spliceosome [BR:tot03041]
    TOT_030000312
Messenger RNA biogenesis [BR:tot03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TOT_030000312
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TOT_030000312
Spliceosome [BR:tot03041]
Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TOT_030000312

SSDB

Motif

Pfam:

LSM SM-ATX

Other DBs

NCBI-GeneID:

20715502

NCBI-ProteinID:

XP_009691352

UniProt:

J4C3U5

LinkDB

Position

3:complement(join(658460..658524,658587..658779,658819..658917,659062..659067))

AA seq 120 aa
MVLIELKNGETYSGILDSCDSFMNMHMVNVVCTSKNGTEFWKLNECFIRGNNVKSLRLPN
EVAEIAKEEKPQSKNININLYNNNFSVKIPTMPASLRGRGRGDLGGMRGRGKIPYPSGRR

NT seq 363 nt +upstreamnt +downstreamnt
atggtgttgattgagcttaaaaatggagaaacatatagcggaatcttggattcctgtgac
tcatttatgaatatgcacatggtcaatgttgtttgtacatcaaagaatggtacagagttt
tggaagttaaatgaatgctttatacgtggaaacaacgtcaagtccctgaggctgcctaac
gaagttgcagaaatcgccaaggaagaaaaaccacaaagtaagaatataaatataaattta
tataataataatttttcagtaaaaataccaacaatgccagcatcccttcgcggaagagga
agaggagaccttggtggaatgagaggtagagggaagataccttatccttcgggtagaaga
tga

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