KEGG   Theileria orientalis: TOT_040000594
Entry
TOT_040000594     CDS       T03460                                 
Name
(RefSeq) U6 snRNP protein Lsm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
tot  Theileria orientalis
Pathway
tot03018  RNA degradation
tot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TOT_040000594
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TOT_040000594
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tot03019]
    TOT_040000594
   03041 Spliceosome [BR:tot03041]
    TOT_040000594
Messenger RNA biogenesis [BR:tot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TOT_040000594
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TOT_040000594
Spliceosome [BR:tot03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TOT_040000594
 Complex C
  U2 snRNP components
    TOT_040000594
SSDB
Motif
Pfam: LSM Hfq LSM14 DYW_deaminase
Other DBs
NCBI-GeneID: 20716648
NCBI-ProteinID: XP_009692525
UniProt: J4DQC7
LinkDB
Position
4:join(1318208..1318210,1318302..1318466,1318501..1318635)
AA seq 100 aa
MLFYNFFQTLVEKNAKVTIELKNDLQISGKLHSVDQYLNIKLTNVTANDTDRYPHLLSVV
NCFIRGSVVRYVFFNPSDIDTEELQELCRRQAMKQTIDKK
NT seq 303 nt   +upstreamnt  +downstreamnt
atgttgttttataatttctttcaaacactggttgaaaaaaacgctaaagtcacaatcgaa
ttaaaaaatgatctacaaatatcagggaaacttcactccgttgaccagtatttaaatata
aagttgaccaacgtcacagccaatgatactgatagataccctcacctgttgtcagtcgta
aactgttttattcgaggctctgtggttcggtatgtgttctttaacccctccgacatcgac
actgaggagctccaggagctgtgtagaaggcaggccatgaagcaaaccatagacaaaaag
taa

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