Tenacibaculum ovolyticum: PG911_02270
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Entry
PG911_02270 CDS
T08793
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
tov
Tenacibaculum ovolyticum
Pathway
tov02020
Two-component system
tov02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tov00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PG911_02270 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PG911_02270 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tov03021
]
PG911_02270 (rpoN)
Transcription machinery [BR:
tov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PG911_02270 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
SF3b1
Med13_C
Motif
Other DBs
NCBI-ProteinID:
WBX77107
LinkDB
All DBs
Position
complement(535385..536845)
Genome browser
AA seq
486 aa
AA seq
DB search
MLKQSLHYKLLQKLSPQQIQLMKLIQLPTQAFEERLKQEIEENPALDTGKEEPENFEDTL
TNADDYDDGSDKIDTDDINIDEYLSDDEYPSYKTQANNYSADDEDKQIPYASGTTFHQSL
KNQLNTFRINEEERSIAEFLVGSIDDSGYIRRAIIDLVDDLAFTQNVFTTEEKVRSVLIN
VVQRLDPIGIGAQDLKECLIIQLKSKSEKQTRVLAIDILENAFDHFVKKHYKKLLEKFNI
NEDQLKEIIAEISKLNPKPGSSYAGNNKIAEQIVPDFSILIVDGVLELTLNSRNAPELHV
SREYNNMLKGYSDSKKKSKTQKDAVMFIKQKLDAAKWFIDAIKQRQQTLLVTMNAIMHRQ
EAYFLTGDERKLKPMILKDIADEIQMDVSTVSRVANSKYVSTPYGTKLIKVFFSESMKND
QGEDVSTREIKKILETVIQEEEKRKPLTDEKLSKILKEKGYPIARRTVAKYREQLDIPVA
RLRKEI
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacaaagtttacattataagttacttcaaaaattatctcctcagcaaattcag
ttgatgaagttaattcaattacctacgcaagcttttgaagaacgcttgaaacaagagatt
gaagagaatcctgctttagacacaggtaaagaagagcctgaaaactttgaagatacgcta
acaaatgctgatgactatgatgatggtagcgataaaattgacactgatgatataaatatt
gatgagtatttaagtgatgatgaataccctagttataaaacacaggcgaataattattcg
gctgatgatgaagataaacaaattccatacgcttcaggtacaacctttcatcaatcttta
aaaaaccaattaaatacttttagaattaacgaagaagaacgttctattgcagaatttcta
gtcggaagtattgatgatagtggatatattcgtagagctattattgatttagttgatgat
ttagcttttacccaaaatgtttttacaactgaagaaaaagtaagaagtgttttaattaac
gttgttcaaagattagatcctataggtattggtgcacaagatttaaaagaatgcttaatt
attcaattaaaatcaaaatctgaaaaacaaactagagtattggctattgatattcttgaa
aatgcattcgatcattttgttaagaaacattataagaaacttcttgaaaaattcaatata
aacgaagatcaattaaaagaaattatagctgaaattagtaaattaaaccctaaaccaggg
agttcttacgctggtaataataaaatagcagaacaaattgttcctgatttttcaatacta
attgttgatggtgtattagaacttacgctaaactctcgtaatgcaccagagctacatgtt
tctcgtgaatataacaacatgttaaaaggttatagtgattctaaaaagaaaagcaaaact
caaaaagatgccgtaatgttcattaagcaaaaacttgatgctgctaaatggtttattgat
gcaattaaacaacgtcaacaaacactactagttacaatgaacgcaattatgcatcgtcaa
gaagcatattttttaactggtgatgaacgcaagttaaagccgatgattttaaaagatatt
gctgatgagatacaaatggatgtatctactgtttctagggttgctaatagtaaatatgta
tctacaccatatggtacaaaattaattaaagtatttttctctgaatcaatgaaaaatgat
caaggagaagatgtttctacccgagaaataaagaaaatattagaaacagttattcaagaa
gaagaaaagcgaaaacctcttactgatgaaaaactatctaaaatattaaaagaaaaagga
taccctattgcaagaagaacagttgcaaagtatcgtgaacaattagatatacctgtagct
agattaagaaaagaaatataa
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