Tenacibaculum ovolyticum: PG911_07305
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Entry
PG911_07305 CDS
T08793
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tov
Tenacibaculum ovolyticum
Brite
KEGG Orthology (KO) [BR:
tov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tov03016
]
PG911_07305
Enzymes [BR:
tov01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PG911_07305
Transfer RNA biogenesis [BR:
tov03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PG911_07305
Prokaryotic type
tRNA splicing ligases
PG911_07305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WBX78055
LinkDB
All DBs
Position
1641652..1643043
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AA seq
463 aa
AA seq
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MGNKLKGKDLIKLGFPKNNSINIALGQINRYRKKEKKERILEEAKEVLLTPEKFQGNAIW
GKVVEGLIKPVEVRFHQLKNTRAPFTIYGENEIDDLAKYQLYDALKLPIAVQGALMPDAH
AGYGLPIGGVLATENAVIPYGVGVDIGCRMCLTIYPIKASYLKGKRHQLENILSEHTKFG
MRETHKVKHDHEIFERTEFNDIPLLKRLKTKAYKQLGTSGGGNHFVEFGTVNITDANNEF
DLPIGEYVGLLSHSGSRGFGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGDYAKACHDNIHKRIGKLLGTKAIAKIENHHNFAWKEQVNGQELIVHRKGATPANK
GQLGIIPGSMTAPGYIVRGLGNNESLNSASHGAGRLFSRKKCKEKFTKSEIKHQLKMNDV
SLIGGGVDEAPMAYKNIKKVMSNQQELVEVLGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattaaaaggaaaagacctaataaaattaggctttccaaagaataatagt
atcaatatcgctttaggtcaaataaacagataccgtaaaaaagaaaagaaagaacgcatt
ttagaagaagctaaagaagtgttgttaacacccgaaaagtttcaaggaaatgccatttgg
ggaaaagtagttgaaggattaataaaacccgtagaagtacgttttcatcaattaaaaaat
accagagcaccctttacaatttacggagaaaatgaaattgacgacttagcaaaatatcaa
ttgtatgatgctttaaaattaccaatagcagtacaaggtgctttaatgcctgatgcacac
gcaggttatggcttaccaattggtggagttttagcaacagaaaatgctgtaattccgtac
ggagtaggtgtagatattggatgtagaatgtgtttaacaatttacccgataaaagcatcg
tacttaaaaggaaaacgacatcaattagaaaatatcttgtcagagcacaccaaattcgga
atgcgtgaaacacataaggtaaaacacgatcatgaaatatttgaacgtactgaattcaat
gacattccattgttaaaacgtttaaaaaccaaagcctataaacaattaggaacttcaggt
ggaggaaaccattttgtggagtttgggacagtaaatattacagatgcgaataatgagttt
gatttaccgattggtgaatatgtaggcttattaagtcatagcggaagtagaggttttgga
gctaacatagctaaacattacacgtatttggcaacaaaacaatgtccgcttcctaaaaat
gtacagcatttggcttggttagatttaaatacgcatgacggacaagaatattggttggca
atgaatttggctggagattatgcaaaggcttgtcacgataatattcacaaacgaataggt
aaattattaggtactaaagccattgctaaaatagagaatcatcacaattttgcttggaaa
gaacaagtaaatgggcaagaactaattgtgcatagaaaaggagcaacacctgcaaataaa
ggacagttaggtattattccgggttctatgacagctccaggatatattgttagaggttta
gggaataacgaaagtttaaattctgcttcacacggtgcagggcgtttgttttctcgtaaa
aagtgtaaagaaaaattcacgaaaagcgaaattaagcatcaattaaaaatgaatgatgtg
agtcttattggtggcggagtagacgaagctccaatggcatacaaaaacattaaaaaagta
atgagtaatcaacaagaattggttgaagtgttaggaacatttacacctaaaattgttaga
atggataagtaa
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