Tenacibaculum ovolyticum: PG911_09850
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Entry
PG911_09850 CDS
T08793
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tov
Tenacibaculum ovolyticum
Pathway
tov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG911_09850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tov03019
]
PG911_09850
03400 DNA repair and recombination proteins [BR:
tov03400
]
PG911_09850
Enzymes [BR:
tov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PG911_09850
Messenger RNA biogenesis [BR:
tov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG911_09850
DNA repair and recombination proteins [BR:
tov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PG911_09850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
WBX74961
LinkDB
All DBs
Position
complement(2221413..2223608)
Genome browser
AA seq
731 aa
AA seq
DB search
MNIEQSELYGSLKKIFGFNQFKGLQEEVVKSILNNENTFVIMPTGGGKSLCYQLPALMKE
GTAIVVSPLIALMKNQVDAIRGISEHHGIAHVLNSSLNKSEIAQVKEDIESGITKLLYVA
PESLVKEEYAAFLRQQKISFVAIDEAHCISEWGHDFRPEYRNLRTIIKQIDNVPIIGLTA
TATEKVQEDILKTLGMSDANVFKASFNRPNLFYEVRPKTTDVEKDIIRFIKQRMGKTGII
YCLSRKKVEEIAQVLQVNGINALPYHAGLDAKKRAKHQDMFLMEDCDVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGYCLTFYSYKDIEKLEKFMANKPVAEQE
VGHALLQEVVGYAETSMNRRKYILHYFGEEFDAVNGEGAELDDNMRNPKKQHEAQNEVKT
LLTVIRDTNEMYKPKEVVNTIIGAGNALLKSHKTTEQPFFGIGKEKDNHYWIALIRQILV
VDLIRKEIEQYGVLKLTARGRKFIENPTSFMMTENHVYATHDDGTIIADTKLKGGVDNKL
VGMLKDLRKSVGKRLGVPPFAVFQDPSLDDMALKFPITLEELSKVHGVGEGKSKKFGKEF
IKLITNYVNDNEVVRPDDLIVKSTGVNSGLKLFIIQNTDRKLPLEDIAKSKGLNMSELIK
EMEAIVFSGTKLNINYAVEDLLDDDQQEEIHDYFMEAETDKIQEALDEFDGDYDDDELRL
MRIKFTSEIAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagagcagtcggagttatatgggtcattgaaaaaaatatttggttttaaccaa
tttaaggggctacaagaagaagtcgtaaaaagtattttaaacaacgaaaatacttttgta
ataatgcctactggtggagggaagtccctttgttatcagttgcctgcattgatgaaagag
ggaacagctattgttgtttctcctttaatagcattgatgaaaaatcaagtagatgctatt
agagggatttcagagcatcatggaattgctcatgtgttaaactcttctttaaataaatct
gaaatagctcaggtaaaagaagatattgaatcaggaataacaaaattattatatgttgct
cctgaatcattggttaaagaggaatatgcagcatttttaagacaacaaaagatctctttt
gttgcaattgatgaggctcactgtatctcagaatgggggcatgattttagacctgaatat
agaaatttacgtactattattaagcagattgataatgtacctataattggtttaaccgct
acagctacagaaaaagtacaggaagatattcttaaaactttaggaatgagtgatgcaaat
gtttttaaagcgtcatttaatagacctaatttgttttatgaagttcgaccaaaaacaaca
gatgtagaaaaagatattattcgttttataaaacaacgaatgggaaagacgggtattata
tattgtttaagtcgtaaaaaggttgaggaaattgctcaagttttacaggttaacggtatt
aatgcacttccttatcatgcaggtttagatgcaaagaaaagagctaaacatcaagatatg
tttttgatggaagattgtgatgtggtcgttgcaactattgcttttggtatgggaatagat
aaacctgatgttcgttttgtaattcaccatgatattcctaagagtttagaaagttattat
caagaaactggtagagctggacgtgacggaggggaagggtattgtttaactttctactca
tataaagatattgaaaaacttgaaaagtttatggctaataaacctgtagcagaacaggag
gtaggtcatgctcttttacaagaagttgtaggatatgcagaaacgtctatgaatagacgt
aaatatatacttcattacttcggtgaagaatttgatgctgtaaatggagaaggagcagag
ttagatgataacatgcgaaaccctaagaagcaacatgaagcacaaaatgaagtaaaaaca
ttactaactgtaattagagatactaatgaaatgtataagcctaaagaagttgtaaataca
attatcggagcaggaaatgcattattaaaatctcataaaacaacagaacaaccttttttc
ggaataggaaaggaaaaggataaccattattggatagctttaattcgtcaaatattagta
gtcgatttaattagaaaagaaatagagcagtatggtgttttaaaattaactgcaagaggt
agaaaatttatagagaatccaacatcatttatgatgacagaaaatcatgtatatgcaacg
catgatgatggaacaataatagcagacacaaagctaaaaggaggtgttgataataagctt
gtaggtatgttgaaagacttacgtaaaagtgttgggaaacgtttaggtgttcctccattt
gctgtatttcaagatccttcattagatgatatggcattgaaattcccaataacattagaa
gaattatctaaagttcatggagttggagaaggaaaatcaaaaaaattcggtaaagaattc
ataaagctaataactaattatgttaatgataatgaagttgttcgaccagatgatttaatc
gtaaaaagtactggagtaaattctggattaaaactttttattattcagaatactgataga
aaattacctttagaagatattgctaaatccaaaggattaaacatgtctgaactaattaag
gaaatggaagcgattgtgttttctggaacaaaactgaatattaattatgcagttgaagac
ttgttagacgatgatcaacaagaagaaattcatgattattttatggaagcagaaacagat
aaaattcaagaagcattagatgagtttgatggtgattatgatgatgatgaattgcgttta
atgcgtattaaatttactagtgaaatagcaaattaa
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