Tenacibaculum ovolyticum: PG911_12575
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Entry
PG911_12575 CDS
T08793
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tov
Tenacibaculum ovolyticum
Pathway
tov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG911_12575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tov03019
]
PG911_12575
03400 DNA repair and recombination proteins [BR:
tov03400
]
PG911_12575
Enzymes [BR:
tov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PG911_12575
Messenger RNA biogenesis [BR:
tov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG911_12575
DNA repair and recombination proteins [BR:
tov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PG911_12575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
RRM_LARP4
Response_reg
AAA_22
Baculo_IE-1
Motif
Other DBs
NCBI-ProteinID:
WBX75490
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All DBs
Position
2818399..2820285
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AA seq
628 aa
AA seq
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MYEESLKILQHYWGHNSFRFPQQEIITTVLEGKNTVVLLPTGGGKSICFQIPALVNEGVC
IVICPLIALMQDQVESLTSKGIKATVIPSGSSQDEIITLFDNIRFGKTKFLYLSPERLQS
RFIQEKIKQLNVNLIAIDEAHCISEWGHDFRPSYQNISILKELHPNTNIIALTATATKKV
INDIILSLDLEAPKVLKKSFYRENLAYQIFKTDDKLHKLKQIFIKTKAPAIVYVNSRVKT
KEICSYLNANGFKSSFYHGGLTSIEKQISFDNWITEKTPIIVATNAFGMGIDKPNVRVVI
HLNLPASIENYIQEAGRGGRNGNKAFSVVLTNENDIKLSKELLNKSLPTIDDIKIVHRKL
YQQFQIAKGEFIETTFDFNFLEFCNKYKLVPNRTYNALQILNSNGIIELNSNFQQKSTIQ
FTVSSKQVLLYSQQNPSSRNFIQTFLRLYGGVFEAPVKIDEFYIAKKAAITSWQVIKELE
SMFEKGLLEYNKATNNSELFFLHPREDDKTVNKVSKNIHLYLEQKKQKNKDLLTFIKNNE
VCRSIQLLDYFNESVVEECGICDVCLQQKQTSSIKTTTIVNLLKNRKPLTVYEIGTLLNE
KEANILILLRTLLSEEKINVTNNKYFLL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaagaatctttaaaaatattacaacattattggggacataattcatttagattt
cctcaacaagaaattattactactgttttagaaggtaaaaacactgttgttttattacca
actgggggtggtaaatctatatgttttcaaattcccgctttggtaaatgaaggggtttgc
attgttatttgccctttaattgctttaatgcaagaccaggttgaaagccttactagcaaa
ggtataaaagcaactgtaattccttcggggagttctcaagatgaaataattacattgttt
gataatattagatttggtaaaaccaaatttttatatctttctcccgaacgtttacaatcc
cgttttattcaagaaaaaataaaacaattaaatgtaaatttaatagcgattgacgaagcg
cattgtatttctgaatggggacatgattttcgaccttcttatcaaaatatatctattcta
aaagaactacaccctaataccaatattattgctttaacagctactgctactaaaaaagta
attaatgatattattctctctttagatttagaagctccaaaagttttaaaaaaatctttt
tatagagaaaacttagcttatcaaatttttaagactgatgataaacttcataagctgaaa
caaattttcataaaaacgaaagctcctgcaatcgtttatgtcaattcaagggttaaaaca
aaagaaatttgttcgtatttaaatgcaaatggttttaaaagtagtttttatcatggtgga
ttaactagtattgaaaaacaaatttcttttgataattggattaccgaaaaaacaccaatt
atagttgctactaatgcatttggtatgggtattgacaaaccaaatgttcgtgttgttatt
catttaaaccttcctgcatctatagaaaattacattcaagaagctggtcgtggtggacga
aatggcaacaaagctttttcagttgttttaactaatgaaaatgatattaaactaagcaaa
gaactattaaataaatcactcccaactattgatgatataaaaattgttcatcgaaaattg
tatcaacaatttcaaatagctaaaggagagtttattgaaactacttttgattttaatttt
ttagagttttgcaataaatataaattagttcctaatagaacctacaatgccttacaaata
ttaaatagtaatggtattattgaattgaattctaatttccaacaaaaatctaccattcaa
tttacggtgtctagtaagcaagttttattatattctcagcaaaatccttcttcaagaaac
tttatacaaacattcttacgtttatatggcggtgtatttgaagcgcctgtaaaaattgat
gaattttatatcgctaagaaagcagcaattacttcatggcaagtaattaaagagctagaa
agcatgtttgaaaagggattattggaatataacaaagcaactaataattcagaattattc
tttttacatccgagagaagatgataaaactgtaaataaagtttctaaaaatattcatctt
tatttagaacaaaaaaaacaaaaaaacaaagacttattaaccttcataaaaaacaatgaa
gtttgtaggagcatacaattactagattactttaatgaaagtgtagttgaagaatgtggt
atttgtgatgtttgtttacaacaaaaacaaacttcttctataaaaactactaccattgtt
aacttattaaagaatagaaaacctttaaccgtttatgaaatcggtacactgctaaatgaa
aaagaagcaaacattttaatacttttgcgaacgctgttatcagaagaaaaaatcaacgtt
actaacaataaatactttttactataa
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