Tenacibaculum ovolyticum: PG911_14750
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Entry
PG911_14750 CDS
T08793
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tov
Tenacibaculum ovolyticum
Pathway
tov03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tov00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PG911_14750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tov03021
]
PG911_14750 (rpoC)
03400 DNA repair and recombination proteins [BR:
tov03400
]
PG911_14750 (rpoC)
Enzymes [BR:
tov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PG911_14750 (rpoC)
Transcription machinery [BR:
tov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PG911_14750 (rpoC)
DNA repair and recombination proteins [BR:
tov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PG911_14750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WBX75895
LinkDB
All DBs
Position
complement(3288431..3292702)
Genome browser
AA seq
1423 aa
AA seq
DB search
MARKNEKYTVKKFNKISIGLASPESILEASRGEVLKPETINYRTHKPERDGLFCERIFGP
IKDYECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIQPGDAKTVEGEPLQKMDFLTEEEYLDILDTLPQENMY
LDDTDPAKFIAKMGAECLIDLLERIDLDTLSFELRHKANTETSKQRKNEALKRLNVVEAF
RDSQKNRENNPEWMIMKAVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLACSAFNADFDG
DQMAVHLPLGPEAILEAQLLMLGSHNILNPANGAPITVPSQDMVLGLYYMTKERKSTPEV
PVKGEGLIFYSPEEVIIALNEERVDLNAGIKVRTHDVVDGEAVTRIIATTVGRVLFNEKV
PKAAGYINEVLTKKSLRDIIGGILKVTDIPSIGDFLDEIKNMGYRYAFEGGLSFSLGDII
IPPEKHTMIADANKEVDAVVGNYNMGMLTQKERYNQVIDIWGRTNNQLTELSMKRLREDQ
QGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEVDCGTLRGLEVTPLKKNDE
IVESLSDRITGRTSLHNVYAPNSDEILVESGELITVKLADKIQSSGIDAVEVRSALTCES
QRGICEKCYGQSLSTGKKVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNISEENKL
IAKFDGKVKIEDLRTVNGKDNDGKEIEIVISRTAEIKIIDKKTDIVLSTNIIPYGSIIFN
KDIKTIKKGDAVCQWDSFNGVIVSEFGGRVKFDNLEQGINYSVEIDEQTGFQEKVMIDSK
NKKIIASLIIEDADGNALRSYSLPVGAHLMVSDGDKVESGHTLVKIPRKSGKAGDITGGL
PRVTELFEARNPSNPAVIAQIDGVVSFGKIKRGNREIIIESKTGDITKYLVKLSNQILVQ
ENDFIKAGMPLSDGATTPIDILNIKGPSAVQEYLVNEIQEVYRLQGVKINDKHFEVVVRQ
MMRKVRIIDSGDTLFLENQLIHKNDFITDNDNIYGMKVVEDAGDSENLKPGQMVSARQLR
DENSILRRADKNLVAARDAQPATAEQVLQGITRASLQTKSFISAASFQETTKVLNEAAVN
GKIDTLEGLKENVIVGKRIPAGTGMRSYDHQIVGPREEMEKNL
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaagaacgaaaaatacactgttaaaaagtttaacaaaatttcaattggttta
gcatcacctgagtctattttagaggcttcaagaggtgaagttttaaagccagaaacgatt
aactaccgtacacacaaaccagaaagagatggtttattttgtgaacgtatctttggtcct
ataaaggattatgagtgtgcatgtggtaaatataaaagaatccgttataaaggaatcatt
tgtgaccgatgtggagttgaagttactgagaaaaaagtacgtagagacagagtaggtcac
attaatttagtagtacctgtagcacatatttggtattttagatcattacctaacaaaatg
ggataccttttaggtttaccatctaagaagttagatatgattatttactacgaacgttat
gtagtaattcaaccaggtgatgctaaaactgttgaaggagaaccattacaaaaaatggat
ttcttaacagaagaagagtatttagatattttagatacacttccacaagaaaacatgtat
ttagatgatacagacccagcaaagtttattgctaaaatgggagctgaatgtttaatcgat
ttattagaaagaattgatttagatactttatcatttgaattacgtcataaagcaaacact
gaaacttctaagcaacgtaaaaacgaagcattaaagcgtttaaatgttgtagaagctttt
agagattctcaaaaaaatagagaaaacaatccagagtggatgattatgaaagcggttcca
gtaataccgccagaattacgtccattagtaccattagatggtggtcgtttcgcaacttca
gatttaaatgatttatatcgtcgtgtaattatccgtaacaatcgtttaaagcgattaatg
gaaattaaagcacctgaggttattttacgtaatgagaaacgtatgttacaagaatcagta
gattcattatttgataacacacgtaaatcatctgcagtaaaaacagaatctaacagacca
ttaaaatctttatctgatagtttaaaaggtaaacaaggtcgtttccgtcaaaacttatta
ggtaagcgtgttgattattctgcacgttcggtaattgttgttggaccagaattaagatta
tttgaatgtggattgccaaaagatatggcagcagaattatacaaaccttttgttattcgt
aaattaatagaaagaggtattgtaaaaactgtaaaatctgcaaagaaaattatagataga
aaagagcctgttgtttgggatattttagaaaatgtaattaaaggacatccagttttatta
aaccgtgcacctacattacaccgtttaggtattcaagcattccaaccaaaattaattgaa
ggaaaagcaattagattacatccacttgcttgttctgccttcaatgccgattttgatgga
gatcaaatggcagttcacttaccattaggacctgaagctattttagaagcacagttatta
atgttaggatctcataatattttaaatcctgcaaatggagcacctattacggtaccatct
caggatatggtattaggtctttactatatgactaaagaaagaaagtcaactccagaagta
cctgttaaaggtgaagggttaattttctattctccagaagaggtaattatagccttaaat
gaagaaagagtagacttaaatgcaggtataaaagtgcgtacacatgatgttgtagatggt
gaagcggtaactagaattatagcaactacagttggtagagttttatttaacgagaaagtg
ccaaaagcagcaggatacattaatgaggttttaactaaaaaatcattaagagatattatt
ggtggtattttaaaagttacagatattccttcaattggagatttcttagatgaaattaaa
aatatgggatatagatatgcattcgaaggaggtttatcattctcattaggagatattatt
attccaccagaaaagcatacaatgattgctgacgcaaacaaagaagttgatgcagttgta
ggtaattataatatgggtatgttaacgcaaaaagagcgttataaccaggtaattgatatt
tggggtagaaccaataatcaattaactgaattatctatgaagcgtttacgtgaagaccaa
caaggatttaactcggtatttatgatgttagattctggagcacgtggatctaaagaacag
attcgtcagttaactggtatgcgtggattaatggcaaagcctaaaaaatctacagcaggt
ggtggagaaattattgaaaatccaattctttctaactttaaggaaggattatcaattctt
gaatactttatatcaacacacggtgctcgtaaaggtttagccgataccgcattaaaaact
gccgatgcaggatatttaacacgtcgtttagtagatgtatctcaagatgttattgtaaac
gaagttgattgtggtactttaagaggtttagaggttacaccattaaagaaaaacgatgaa
attgttgaatctttaagtgatagaattacaggtcgtacttcattacataacgtatacgca
ccaaactctgatgaaattttagttgaatcaggagagttaattacagttaaattagcagat
aaaattcaatcatctggtattgatgcagtagaagttcgttcagcattaacatgtgagtct
caaagaggaatatgtgaaaaatgttatggacaatctttatcaacaggtaaaaaagttcaa
agaggtgaggcagttggtgtaattgcagcacaatctattggagaacctggtacacagtta
acattacgtacattccacgttggaggggttgcaggaaacatttctgaagagaataagtta
attgcaaaatttgacggtaaagttaaaattgaagatttacgtactgtaaatggtaaagat
aatgacggaaaagaaattgaaatcgttatttcacgtactgctgaaattaaaattatcgac
aagaagactgatatcgtattaagtactaacattatcccttatggatctattatctttaat
aaagatattaaaaccatcaaaaaaggagatgcagtatgtcaatgggattcatttaacgga
gttatcgtatcagaattcggaggaagagttaagtttgacaatttagagcaaggtattaat
tactctgttgaaattgatgaacaaactggtttccaggaaaaagtgatgatcgattctaaa
aacaaaaaaattattgcttcattaattattgaagatgctgatggtaatgcgttacgttcg
tatagtttaccagtaggagctcatttaatggtaagtgatggtgataaagtagaatcaggt
catacattagttaaaattccacgtaaatctggtaaagcaggagatattacaggaggttta
ccacgtgtaacagaattattcgaagcacgtaacccatctaacccagcagtaattgctcag
attgatggtgtggtatctttcggtaaaattaaaagaggtaatcgtgagattattattgaa
tctaaaacaggtgatattactaaatacttagtgaaattatctaatcagattttagttcaa
gaaaacgatttcattaaggcaggtatgccattatctgatggagcaacaacacctattgat
attttaaatattaaagggccttcagctgtacaagaatacttagtaaacgaaattcaagaa
gtatatcgtttacaaggtgtgaaaattaatgacaagcatttcgaagtagttgtacgtcaa
atgatgcgtaaagttagaattattgattcaggagatacattattcttagagaaccaatta
attcataagaacgactttatcacagacaacgacaatatctacggaatgaaagttgttgaa
gatgcaggagattctgagaatttaaaaccaggtcaaatggtttcagctcgtcagttaaga
gatgaaaattcaattttacgtagagcagataaaaatctagtagcagcacgtgatgcgcag
cctgcaacagcagagcaagtattacaaggtattacaagagcatcgttacaaacgaaatca
tttatatcagcagcatcgttccaggaaactactaaagtattaaatgaagccgcagtaaac
ggtaaaatcgatacattagaaggattaaaagaaaatgtaattgttggtaaacgtatacca
gcaggtacaggaatgagatcttacgatcatcaaatcgtagggccaagagaagaaatggag
aaaaatttataa
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