Tenacibaculum ovolyticum: PG911_17260
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Entry
PG911_17260 CDS
T08793
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tov
Tenacibaculum ovolyticum
Pathway
tov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG911_17260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tov03019
]
PG911_17260
Enzymes [BR:
tov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PG911_17260
Messenger RNA biogenesis [BR:
tov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG911_17260
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
WBX78488
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All DBs
Position
complement(3832729..3834081)
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AA seq
450 aa
AA seq
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MTFQDLDLSNPLQNSIEELGFVNPTPIQEKAFPIVRSGSDVVGIAQTGTGKTFAYMLPIL
RDLKFSKQQHPRILVVVPTRELVVQVVNEIEKLSQFMTLRTIGVFGGIPLNRHKQAVALG
ADVIVATPGRLYDLALSNTLKLKSIQKLVIDEVDVMLDLGFRFQLLNIFDLLPVRRQNIM
FSATMTQDVEALIDDFFTAPKKIFIAVSGTPLDNINQISYDVPNFYTKVNLLHELLYNKS
EYSKVLIFTPNKRNADRLFECVKEEFPSQSCVIHSNKTQNYRLRSIEQFNKGEKRILIAT
DVIARGLDLAEVTHVINFNTPYYPENYMHRIGRTGRAEHEGTSILFSTVKEQEAKLRIEE
LMNYEVPKLEIPEHVEISKQLTEEERPKEEAEKNKNRTSLEYVPGPAFHEKSEKNSKTNQ
GGSYRREIAKKYKKPKTRGDKNYNMRNKKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
attacttttcaagatttagatttatcaaatccattacaaaattcaatagaagaattaggt
tttgtaaacccaacaccaattcaagaaaaagcttttcctattgttagatctggtagtgat
gtggttggaattgcacagacaggtacaggtaaaacttttgcctatatgttaccaatactt
cgcgatttgaaattttcaaaacaacaacatcctagaatacttgttgtagtaccaacacgt
gaattagtagtgcaagttgttaatgaaatagaaaagctatcacagtttatgactttgcgt
actataggagtatttggaggaattcctttaaatagacacaaacaagctgttgcactaggc
gcagatgttattgtggctactccaggacgtttatatgatttagcattgagtaacacgtta
aagttgaaatcaattcaaaagttggtgattgatgaagtagatgtaatgttagacctaggt
tttagatttcaattattaaatatttttgatctactacctgtacgtcgtcaaaatattatg
ttttctgcaactatgacacaagatgtagaagcattaattgatgatttttttacagcgcca
aaaaagatttttatagcagtaagtggtacaccgttagataatattaatcaaattagttat
gatgtacctaacttttatactaaagtaaatttattacatgaattgctttataataaaagt
gaatatagtaaagtgttaatctttacaccaaataagaggaatgctgataggttatttgaa
tgcgtaaaagaagaatttccatcgcaatcatgtgtaattcattcgaataagacacaaaat
taccgtttacgttctattgagcaatttaataaaggagaaaaacgaattctaatagcaaca
gatgttattgcccgtggactagatttagcagaagttactcatgtaattaattttaatact
ccttactaccctgagaactatatgcacaggatcggacgtacaggtcgtgctgagcatgaa
ggtacttcaattcttttttcaacagtaaaagaacaagaagcaaaacttagaattgaagag
ttaatgaactatgaagttcctaagttagaaattcctgagcatgttgaaatttctaagcag
ttaacagaagaagagcgcccgaaagaagaagcagaaaaaaataaaaatagaacttcatta
gagtatgttcctggtccagcttttcatgaaaaaagtgaaaaaaatagtaaaacaaatcaa
ggaggatcttatcgtagagaaattgcgaaaaaatataaaaaaccaaaaactcgaggagat
aagaattataacatgcgtaacaagaaaaaataa
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