Tenacibaculum ovolyticum: PG911_17395
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Entry
PG911_17395 CDS
T08793
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tov
Tenacibaculum ovolyticum
Pathway
tov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG911_17395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tov03019
]
PG911_17395
Enzymes [BR:
tov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PG911_17395
Messenger RNA biogenesis [BR:
tov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG911_17395
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WBX76378
LinkDB
All DBs
Position
3866322..3867554
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AA seq
410 aa
AA seq
DB search
MQFSDLQLNQSILKALSEERYHKATLVQQKVIPLVLDKKDVIVGSQTGSGKTAAFALPIL
HNLEQEPQAEQGVKKIKALIISPTRELAIQIEESFNTYGKHTNLQAAAVYGGISIKPQKE
TLAKGIDVLVATPGRFIDLQEQGSIDLNALKTFVLDEADLMLDMGFIQDVRKIEALCPRK
KQTLLFSATMPEKVSDLAKAMLYKPETVNVIPTGNTVNKIGQLLYYTPKKHKVDLCLHLL
RNTIQGRIIIFRRTKYGVDKLEQTLLKNGYKATSVHGDKTQILRNQAIEDFKSNKVNILI
ATDVAARGIDISKIDAVINVDIPNVPETYVHRIGRTGRAGKSGIAFSLCSADETSYIKAI
QEFLKRPIKIIEDQPFLLVKPKHKKQPNTISKNKKGRKSEASKKKKKRWY
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttcagacttacaacttaatcaatcaattttaaaagcactaagtgaagagaga
tatcacaaagctactttagtacagcaaaaagtgattccgttagtactagataaaaaagat
gtgattgttggttcacaaacaggatcgggtaaaacagcggctttcgctttacctattctt
cataatttagaacaagaaccacaagctgaacaaggtgtaaaaaaaataaaagctttaatt
ataagtccaaccagagagttagcgatacaaattgaagaaagctttaatacctacggtaaa
cacacaaatttacaagctgccgcggtttatggaggtatctctataaaaccacaaaaagaa
actttagcaaaaggaattgacgtattagtagcaacacctggtcgttttatagatttacaa
gaacaaggaagtattgacttaaacgcattaaaaacctttgttttagacgaagcggattta
atgttagacatgggctttattcaagatgtaagaaaaattgaagcattatgtcctcgtaaa
aaacaaacattactcttttctgcaacaatgcccgaaaaagtaagtgatttagcaaaagca
atgctatacaaacccgaaacggttaatgtaattcctacaggcaatacagtaaataaaatt
ggacaattactttactatacacctaaaaaacataaagtagatttatgtttacacttattg
cgtaataccatacaaggacgtattattatttttagacgtactaaatacggtgttgacaaa
ttagagcaaacgcttttaaaaaatggctacaaagcaacaagtgttcacggagataaaaca
caaattttacgtaaccaagctattgaagattttaaaagtaataaagtaaatattttaata
gctaccgatgttgctgcccgtggtattgacattagtaaaattgatgctgttataaatgta
gacataccaaatgtaccagaaacttatgtacacagaattggtagaactggtagagctggt
aaatctggaattgcattttcactatgtagtgccgatgaaactagttacattaaagcaatt
caagagtttttaaagagacctataaaaattattgaagaccaacctttccttttagtaaaa
cctaagcataaaaaacaaccaaacaccattagtaaaaacaaaaaaggacgtaaatctgaa
gcttctaaaaagaagaaaaagcgctggtattaa
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