Tomitella fengzijianii: FO059_06760
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Entry
FO059_06760 CDS
T06118
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
toy
Tomitella fengzijianii
Pathway
toy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
toy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FO059_06760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
toy03400
]
FO059_06760 (mfd)
Enzymes [BR:
toy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FO059_06760 (mfd)
DNA repair and recombination proteins [BR:
toy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FO059_06760 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_22
RecG_dom3_C
LPG_synthase_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QDQ99115
UniProt:
A0A516X7S0
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All DBs
Position
1472913..1476512
Genome browser
AA seq
1199 aa
AA seq
DB search
MGALAQTALTDHALREFADMTGRPELSVVAPSAARSLLAATLGRRAPVLLVTASGREADD
RTRELQEILGEAVAQFPSWETLPHERLSPGADTVGRRLSVLRRLARPDDAVYGPPLQVIV
ATVRSLVQPMAPGLGEIDPVIVREGEEHDLEGLVGRLVELAYTRVDMVGKRGEFAVRGGI
LDVFPPTSDHAVRVEFWGDEVSELRPFSVADQRSIAEVDVPVLIAPPCRELLLTEDVRGR
AAELAAGHPEDAALVELLESLAQGIPAEGMEALIPALVPGGTALLTDVLPDGAHVLIADP
ERVRTRATDLVKTGKEFLEASWSAASTGGDAPLDTSRLDLGDTAYRSLRQVHEAAVEAGV
PWWTVSPLASGDEDEYVPELSASPTARGSEEQIATIFATLRAHVTGGGRAALIVGGAGTV
TRLLQRLSDAEVPAVRAETADDVAPGRVAVLRGAMQDGLVLPDAELVLITEADLTGNRVA
AVGDGKRMPPKRRNQVDPLALAAGDLVVHDQHGIGRFVEMTSRTISGARREYLVLEYAGK
RGQPGDRLFVPMESLDQLSRYVGGELPSLSKLGGSDWKNTKRKARKAVREIAGELVQLYA
KRQAAPGHPFAQDTPWQREMEDTFAFTETGDQLTAIDEVKSDMEKAVPMDRVICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHQQTFEDRMAGFPVTIKGLSRFTDPAESR
ATVDQMATGEVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVEHKEHIKALRSHVDVLT
MSATPIPRTLEMSLAGIREMSTILTPPEERHPILTYVGAYADKQVAAAIRRELLRDGQVF
YVHNRVSSIDKAAARLRELVPEARVVTAHGQMNEEMLEQTVQGFWNREFDVLVCTTIIET
GLDISNANTLVVERADALGLAQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAYDRLTTI
ARNNELGAGMAVAMKDLELRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEAYRAVADGA
PVTAVEETKEVHVDLPVDAHIPPDYIDGDRLRLEAYRKIAAAADEAGIAAVVDELVDRYG
PVPEEVQRLVAVARLRLLCRQYGVTDVGVSGTQVRLSPMPLADSKQMRLKRLYKGATFRA
TTSTVQIPLPRTGGLGSARLRDTELLQFVVDFLLALDGKPAGMVDLSAGLAIAAAAAPA
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgctggcgcagacagcgctcacagaccatgcgctgcgcgagttcgcggacatg
acgggtcggccggaactgtccgtcgtcgccccgtccgcggcacgctcgctgctggcggcg
acgctgggacggcgcgccccggtgctgctggtgacggccagtggacgcgaggcggacgat
cgcacccgcgagctgcaggagatcctcggggaggcggtcgcccagttcccgtcgtgggag
acgctgccccatgagcggctgtctccgggcgcggacaccgtggggcgccggttgtcggtg
ctgcgccggctggcgcgcccggacgacgccgtctacgggccgccgttgcaggtgatcgtg
gccaccgtgcgttcgctggtgcagccgatggccccggggctcggcgagatcgacccggtg
atcgtgcgcgagggcgaggaacacgacctggaagggctcgtcggccggcttgtcgagctg
gcgtacacgcgcgtggacatggtgggcaagcgcggcgagttcgcggtgcgcggcggcatc
ctcgacgtcttcccgcccacctccgaccacgcggtgcgcgtcgagttctggggcgacgaa
gtctccgagctgcgcccgttctcggtggcggaccagcgctccatcgccgaggtcgacgtg
ccggtgctcatcgcgccgccgtgccgtgagctgctcctcaccgaggacgtgcgcgggcgg
gcggccgagctcgcggcggggcacccggaggacgcggcgctggtcgaactgctcgaatcg
ctggcccaggggatccccgccgagggcatggaggcgctgatccccgcgcttgtcccgggc
ggcaccgcgctgctcaccgacgtcctcccggacggcgcccacgtgctgatcgccgaccct
gagcgcgtgcgcacccgcgccaccgacctggtcaagacgggcaaggagttcctcgaggcg
tcgtggagcgccgcctcgacgggcggcgacgcgccgctggacacgtcccggctggatctg
ggtgataccgcgtaccggtcgttgcggcaggtgcacgaggcggccgtcgaggcgggggtg
ccgtggtggacggtgagcccgttggcctcgggggatgaggacgagtacgtgccggagctg
tccgcgtcgcccacggcgcgcgggtcggaggagcagatcgcgacgatcttcgcgaccctg
cgtgcccacgtgaccggcggcggccgcgcggcgctgatcgtcggcggtgccggcacggtc
acccgcctgctgcagcgcctctcggacgccgaggtgccggcggtgcgcgcggagacggcg
gacgacgtggccccggggcgcgtcgcggtactgcgcggggccatgcaggacgggttggtg
ctgcccgacgcggagctggtgctcatcaccgaggccgacctcaccggcaaccgggtcgcc
gcggtgggcgacggcaagcggatgccgccgaagcgccgcaatcaggtggacccgctggcc
ctcgccgccggcgacctggtggtgcacgaccagcacggcatcggcaggttcgtcgagatg
acctcacgcacgatctccggcgcccgccgcgaatacctggtgctcgagtacgcgggcaaa
cgcggccagccgggcgacaggctcttcgtgcccatggaatcgctcgaccagctctcccgc
tacgtcggcggcgagttgccttcgttgagcaagctcggcggttcggactggaagaacacc
aagcgcaaggcgcgcaaggccgtccgcgagatcgcaggcgagctggtgcagctctacgcc
aaacggcaggcggcccccgggcacccgttcgcgcaggacaccccgtggcagcgggagatg
gaggacacgttcgcgttcaccgagaccggcgatcagctcaccgccatcgacgaggtcaag
tccgacatggagaaggccgtgccgatggaccgcgtcatctgcggcgacgtcggctatggc
aagaccgagatcgccgtccgcgccgcgttcaaggcggtgcaggacggcaagcaggtggcg
gtgctggtgcccacgacgctgctggcgcagcagcaccagcagacgttcgaagaccgcatg
gccggtttccccgtcaccatcaagggactgtcgcgcttcaccgacccggccgagtcgcgc
gccaccgtcgaccagatggccacgggggaggtcgacgtggtcatcggcacgcaccggctg
ctgcagacgggcgtgcggtggaaggacctgggactggtcatcgtcgacgaggagcagcgc
ttcggcgtcgaacacaaggagcacatcaaggcgctgcgtagccacgtggacgtgctcacc
atgtccgccacgcccatcccgcgcaccttggagatgagcctggccggtatccgcgagatg
tcgaccatcctcaccccgccggaggagcgccaccccatcctcacctacgtgggcgcgtat
gcggacaagcaggtggcggccgcgatccggcgcgagctgctgcgcgacggccaggtgttc
tacgtgcacaaccgggtcagctccatcgacaaggcggcggcgcggctgcgggagctggtg
cccgaggcgcgagtggtcaccgcgcacggccagatgaacgaggagatgctcgagcagacg
gtgcaggggttctggaaccgcgagttcgacgtcctggtgtgtacgacgatcatcgagacg
ggcctggacatctccaatgcgaacaccctggtcgtggagcgggccgacgcgctgggcctg
gcgcagctgcatcagctgcgcgggcgcgtggggcgcgggcgcgagcggggctacgcctac
ttcctgtatccgccggagaagccgctgacggagaccgcctacgaccggctcaccaccatc
gcccgcaacaacgagctgggtgcggggatggcggtggccatgaaggacctcgagctgcgc
ggcgccggcaacgtgctgggcgccgagcagtccgggcacgtcgcgggcgtcggattcgat
ctctacgtgcgcctggtgggggaggcggtggaggcctaccgcgcggtggccgacggcgcc
cccgtaaccgccgtggaggagaccaaggaggtgcacgtggacctgccggtcgacgcgcac
atcccgcccgactacatcgacggcgaccgcctgcgcctcgaggcctaccgaaagatcgcc
gcggcggccgacgaggcggggatcgccgcggtggtcgacgagctggtggaccgctacggg
cccgtgccggaggaggtgcaacgcctcgtcgcggtggcacggctgcgcctgctgtgccgg
cagtacggcgtcacggacgtgggcgtcagcggcacgcaggtccggctctcgccgatgccc
ctcgccgattccaagcaaatgcggctcaagcggctctacaagggtgcgacgttccgggcg
accacctcgaccgtgcagatcccgcttccgcgcacgggcggcctggggtcggcccggctg
cgtgacaccgagctgctgcagttcgtcgtcgacttcctcctggctctcgacggcaagccg
gccgggatggtcgacctgtcggcgggcctggccattgctgcggcggcggcgccggcgtga
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