Tomitella fengzijianii: FO059_07860
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Entry
FO059_07860 CDS
T06118
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
toy
Tomitella fengzijianii
Pathway
toy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
toy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FO059_07860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
toy03019
]
FO059_07860
03009 Ribosome biogenesis [BR:
toy03009
]
FO059_07860
Enzymes [BR:
toy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FO059_07860
Messenger RNA biogenesis [BR:
toy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FO059_07860
Ribosome biogenesis [BR:
toy03009
]
Prokaryotic type
rRNA helicases
FO059_07860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDQ97263
UniProt:
A0A516X2I9
LinkDB
All DBs
Position
1726824..1728845
Genome browser
AA seq
673 aa
AA seq
DB search
MTDDDSVGPRAGEPLSGKPLSAEPLSADEPTPTEDTSTAGASAADGDPAGRRPDARSEGG
QSAGGRDAGGGSAEASATGAAPSAELSFSELGIAPEVLRALGDVGYETPSPIQAETIPLL
LAGRDVVGLAQTGTGKTAAFAVPVLSRIVPGGKKPQALVLAPTRELALQVSEAFGSYSVH
QPGVHVLPIYGGQSYGIQLSGLRRGVQVVVGTPGRIIDHLDKGTLDLSELEFLVLDEADE
MLKMGFQEDVERILADTPASKQVALFSATMPAGIRKLSKRYLDNPAEVTIKGKTATARNI
TQRWVSVSNQRKLDALTRILEVEDFDAMIIFVRTKQATEDLAEKLRARGLAAAAINGDIV
QAQRERTIGQLKDGRIDVLVATDVAARGLDVDRISHVVNYDIPHDTEAYVHRIGRTGRAG
RAGQALLFVSPRETRLLKSIERATRQPLEEMSLPTVDDVNAQRVAKFADSITASLEAPMV
ELFRQLVEEYQREHDVPMVDIAAALATQSRDGESFLLAPEPERRDHGKGRKNDRDRGGRD
RPRGHHGGGFSTYKIQVGRRHGVQPGAIVGALANEGGLGRADFGHISIRGEYSLVELPAD
LSRETVAALRHTRVCGELIDLKPDSGPPSGAPGSFGGKGRGGGHRKGGRGPRDGDHGGKR
SGGGRRKWDGPRG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgatgacagcgtcggcccccgcgcgggcgagcctctttccggcaagcctctt
tccgccgagcctctttccgccgacgagcccactcccactgaagacacttccactgcaggg
gcctccgctgcagacggcgatcccgccgggcggcgcccggacgcgcgatcggagggcggg
cagtccgccggcggccgtgacgccggcggagggtcggctgaagcgtccgccaccggcgca
gcgccgtcggccgagctctcgttctccgagctcggcatcgcgccggaggtgctgcgtgcg
ctcggcgacgtgggctacgagacgccgtcgcccatccaggccgagaccatcccgctgctg
ctcgccggtcgcgatgtggtggggctggcgcagaccgggacgggcaagaccgccgcgttc
gcggtgccggtcctgagccggatcgtgcccggcggcaagaagccgcaggcgctggtgctg
gcccccacccgtgagctggccttgcaggtgtcggaggcgttcggcagttactcggtccat
cagccgggtgtgcacgtgctgccgatctacggcggccagagctacggcatccagctttcc
ggcctgcggcgcggagtgcaggtggtggtcggtacgcccggccgcatcatcgaccacctc
gacaagggcactctggatctgagcgagctcgagttcctggtgctcgacgaggccgacgag
atgctcaagatgggcttccaggaggacgtcgagcgcatcctcgccgacactccggcctcc
aagcaggtcgcgctcttctccgcgacgatgccggcgggcatccgcaaactgtccaagagg
tatttggacaaccccgccgaggtcacgatcaagggcaagacggccaccgcccgcaacatc
acccagcggtgggtgtccgtgtcgaatcagcgcaagctggacgcgctcacgcgcattctc
gaggtcgaggacttcgacgcgatgatcatcttcgtgcgcaccaagcaggcgactgaagac
ctcgcggagaagctgcgcgcacgggggctcgccgccgcggccatcaacggcgacatcgtc
caggcgcagcgcgagcgcaccatcggccagctcaaggacggccggatcgacgtcctcgtg
gcgacggacgtggcggcgcgcgggctcgacgtcgaccggatctcacacgtcgtcaactac
gacatcccgcacgacaccgaggcgtacgtgcaccgtatcggccgcaccgggcgtgcgggc
cgtgcggggcaggcgctgctgttcgtgtcgccgcgagagacccgcctgctcaagtccatc
gagcgcgccacacgccagccgctcgaggagatgagtctgccgacggtcgacgacgtcaac
gcccagcgtgtggcgaagttcgccgattcgatcaccgcgagcctcgaggcgccgatggtc
gaactgttccgccagctggtcgaggagtaccagcgtgaacacgacgtgccgatggtcgac
atcgcggcggcgttggccacccagtcccgcgacggcgagtcgttcctgctggcgccggag
cccgagcggcgcgatcacggcaaggggcgcaagaacgaccgggaccgcggcgggcgcgat
cggccgcgggggcaccacggcgggggcttctccacctacaagatccaggtcggccgtcgt
cacggtgtgcagccgggcgcgatcgtcggtgcgctcgccaacgaaggcggcctgggccgc
gcggacttcggtcatatcagcatccgcggcgaatattcactggtggagctgcccgcggac
ctgtcgcgtgagacggtggccgcgttgcgtcacacccgggtgtgcggtgaattgatcgac
ctcaagccggacagcggtccgccgtccggggctccggggtccttcggaggtaagggccga
ggcggcgggcaccgcaagggcggccgcggtccgcgtgacggggaccacggaggcaagcgc
tccggcggcggccggcgtaagtgggacggcccgcggggatag
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