Tomitella fengzijianii: FO059_12840
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Entry
FO059_12840 CDS
T06118
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
toy
Tomitella fengzijianii
Pathway
toy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
toy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FO059_12840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
toy03019
]
FO059_12840
03400 DNA repair and recombination proteins [BR:
toy03400
]
FO059_12840
Enzymes [BR:
toy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FO059_12840
Messenger RNA biogenesis [BR:
toy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FO059_12840
DNA repair and recombination proteins [BR:
toy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FO059_12840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
MRFAP1
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
QDQ98040
UniProt:
A0A516X4R6
LinkDB
All DBs
Position
2815359..2817557
Genome browser
AA seq
732 aa
AA seq
DB search
MGITGPTGSDAAAVDHDDDDDGVAAAAAAPERAALRTRADELLADLAGPGARLRDDQWTA
IEALVVDRRRALVVQRTGWGKSAVYFIAAKLLREAGRGPTVIVSPLLALMRNQVAAAERA
SVRAATINSGNITEWDGIHEQVRAGGVDVLLVSPERLNNPDFRENVLPHLAKDAGLVVVD
EAHCVSDWGHDFRPDYRRIRTLVADLGRDTPVLATTATANDRVVADVAAQLGVGAAADGA
ADEDSTLVLRGGLDRASLHLSVIRVADSRDRAAWLAQNLGSLPGSGIVYALTVSAAEDLA
AVLAEQGHTVAAYTGRTDPAERETLEADLLENRVKCLVATSALGMGFDKPDLGFVVHVGA
PSSPISYYQQVGRAGRATDRAEVVLLPGPEDAQIWRYFASVSFPDEQTVRAVIGALGEAP
ISTPALESRVDLGRNRLEMVLKVLDVDGAVRRVRGGWVATGQEWVYDTERYAGLARARSE
EQQAMLDYERTAECRMRFLRAQLDDPLLAAETDGCGRCDNCTGDARDAAVDQAAARSARD
RLDRPGVDIAARRQWPTGLPRLGMELKGRIDDGPAVGRAVGRLTDLGWGTRLRSLLAEPD
APAPPWLIDGFVEVLKSWRWEVRPDSIAALHSETHPQLVESVARSLASIGRLGLLPSVSR
PQDLPPVTAANSAFRVAQIGQRFTVPQPPPPGSTILLVTDLVETGWTVTMAARAVRGAGA
HAVLPLALATRS
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggggatcactggaccgaccggatcggacgctgctgccgtggaccacgacgacgacgac
gacggagttgccgccgccgcggccgcaccggaacgcgccgcgttgcgcacgagggccgac
gagctgctcgcggacctcgcgggtcccggcgcgcggctgcgggacgaccagtggaccgcc
atcgaagccctggtggtcgaccggcggcgcgcgctggtggtccagcgcaccggttggggc
aagtccgccgtgtacttcatcgcggcgaagctgctgcgcgaggccggccgcggccccacg
gtgatcgtctcgccactgctcgccctcatgcgcaaccaggtggccgccgccgagcgcgcg
agcgtgcgcgcggccacgatcaactccggcaacatcaccgagtgggacgggatccacgag
caggtccgcgccggcggggtcgacgtccttctggtcagtccggaacggctcaacaacccc
gacttccgcgagaacgtcctcccgcacctcgcgaaggacgcggggctggtggtggtggac
gaggcgcattgcgtgtccgactggggccatgacttccgcccggactaccgccgcattcgc
acactcgtcgccgatctgggccgcgacacccccgtgctggcgaccaccgccacggccaac
gaccgcgtggtggccgatgtcgcggcgcagctcggcgtgggcgccgcggcggacggcgca
gcggacgaggactccacgctggtgctgcgcggcggactcgaccgcgcgtcgctgcacctg
tcggtgatccgcgtcgcggactcccgcgaccgcgccgcatggctcgcccagaacctcgga
tcgctgcccggctccggaatcgtctacgccctgacggtctcggcggccgaggacctcgcc
gccgtgctcgccgagcagggccacaccgtggcggcgtacacgggccgcaccgaccccgcc
gaacgggaaaccctggaggcggacctgctggagaaccgggtcaagtgcctcgtcgccacc
tccgccctgggcatgggcttcgacaagccggacctgggtttcgtcgtgcacgtcggcgcg
ccgtcctcgcccatctcctactaccagcaggtgggccgtgccggccgcgcgacggaccgc
gccgaggtggtgctgctccccggccccgaggacgcgcagatctggcgctacttcgcttcc
gtgtcgttccccgacgagcagacggtgcgcgcggtgatcggcgcgctgggcgaggccccg
atatccaccccggcgctggagtcccgcgtggacctggggcgcaaccgcctggagatggtg
ctcaaggtgctcgacgtggacggggcggtgcgccgcgtccgcggcggctgggtcgccacc
ggccaggagtgggtgtacgacaccgagcggtacgcgggtctggcccgggcgcggagcgaa
gagcagcaggcgatgctggactacgagcgcaccgccgagtgccgcatgcggttcctgcgc
gcccagctggacgatccgctgctggccgcggagaccgacggctgcggccgctgcgacaac
tgcaccggcgacgcccgcgacgccgcggtcgatcaggccgccgcccgctccgcccgcgac
cgcctcgacaggcccggagtggatatcgccgcacgccggcaatggcccaccggcctgcct
cggctgggaatggagctcaagggccggatcgacgacggtcccgccgtgggccgcgcggtc
ggtaggctgacggacctcggctgggggacccgcctgcgttcgcttctcgccgagccggac
gcgccggcgcctccgtggctcatcgacggcttcgtcgaggtgctcaagtcctggcggtgg
gaggtgcgcccggactcgatcgccgccctgcactcggaaacccacccacagcttgtcgag
tccgtcgcgcggagcctcgcatcgatcggccgcctcgggctgctcccctcggtctcccgc
ccgcaggatctgccgccggtgaccgcagccaactcggccttccgggtggcccagatcggc
cagcggttcaccgtcccgcagccgcccccgcccgggtccaccatccttctcgtcaccgac
ctggttgagacgggctggacggtcacgatggcggcccgggccgtgcgcggggcgggtgcg
cacgcagtgcttcctctggcgctcgccacccgttcctga
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