Tolypothrix sp. PCC 7712: HGR01_10100
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Entry
HGR01_10100 CDS
T11261
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
toz Tolypothrix sp. PCC 7712
Brite
KEGG Orthology (KO) [BR:
toz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
toz03016
]
HGR01_10100
Enzymes [BR:
toz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HGR01_10100
Transfer RNA biogenesis [BR:
toz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HGR01_10100
Prokaryotic type
tRNA splicing ligases
HGR01_10100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UYD28350
LinkDB
All DBs
Position
complement(2543080..2544576)
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AA seq
498 aa
AA seq
DB search
MQPKNLQRLLRALGRQGLDVTYSDVYDGLRLRTYSVRLANSPDTPAAEVLLPEGFPVEAK
ALKQLANLANMRHPAGGCVCRACATPDFHPGDAGVAIGSVVETVDQVIPGAVGSDINCGM
RLHVADLTIDEFLKKRDLFVERMKGDYFFGTRDVTMTAHAMRALFQHGVPGWLDAMLDNA
TGSVVKSDLQQLSQESDRIFLDGSMNGNWKLAPAELVPDDGLVRDGGLATIGSGNHFVEV
QRVDKVENRALAHAWGVREGQLAFMIHSGSRNVGKYIGGMWRDRAKAAWPQGLKYPESQI
FPLSAHSHPELVASYLEAEATAANYGFINRLLLAELLRLRLREVYGDIEAPLVYDLPHNI
TLPSAESEEEANSQSKIARWVTRKGACPAYAGQPVIIPGSMGAYSYLMVGKGNPAFCHSA
SHGAGRVRSRFELNRKGASHTEAELGLTGVDCITLREERRIEEAPAAYKPIQSVIDVQVE
ANMVDVVARLSPVLTFKA
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaaaaaatcttcaacgtctcttgcgtgctttaggacgacaaggtttagatgtt
acttacagcgatgtctacgacgggctacgcctacgcacctattctgttcggcttgctaat
tctcctgataccccagcagcagaagttctgttaccggaaggctttcctgtagaagctaaa
gcactcaaacaattagcaaatcttgctaacatgcgccatcctgcgggtggatgtgtctgt
cgtgcttgtgctacccctgattttcaccctggtgatgctggggttgctattggttcagtg
gtggaaactgtcgatcaagttattcctggtgctgttggttctgacattaattgtgggatg
cgcctccatgttgcggatttaacaatcgatgaattcctcaaaaagcgcgatttatttgta
gaacgcatgaaaggcgattacttctttggtactcgcgatgtcactatgactgctcatgca
atgcgtgcattatttcagcatggcgttcccggttggttggatgcgatgctagataacgct
acggggagtgtagttaagtctgatttacagcagctatcccaagagagcgatcgcattttc
ttggatggttcgatgaatggtaactggaaacttgcgccagcagaattggttcctgatgat
ggattggtacgtgatggcggactagcaaccatcggttcgggaaatcactttgtcgaagtg
caacgagtggacaaagtcgaaaatcgcgctcttgctcacgcttggggtgtgcgtgaggga
caattagcctttatgattcactctggttcgcggaatgtaggtaagtacattggcggaatg
tggcgagatagagccaaggctgcttggccgcaaggtttaaaataccctgagtctcagata
tttcccctttctgctcattctcacccggaactagtcgccagttatttagaagcggaagca
acggctgctaactatggttttattaaccgcctgctgttagcagaactactacgtctgcgt
ttgcgagaagtatacggtgatatagaagcacccttagtttacgatttaccgcacaacatt
accttgccttcagcagaatcggaagaagaagccaattcccaatccaaaatcgctaggtgg
gtaacgcgcaaaggtgcttgtccagcttatgcaggacaaccagtaattatccctggttct
atgggcgcttattcctacctgatggtaggtaaaggtaatcccgcattttgccattctgca
tcacatggtgcaggaagagtgcgatcgcgttttgaactgaaccgcaaaggcgcatcccac
actgaagccgaattgggattaactggagttgattgcattaccttacgcgaagaacgccga
attgaggaagcaccagccgcttacaaacctattcagtctgtaattgatgtgcaggtagaa
gccaatatggtggatgtagttgcaaggttgagtcctgtattgacttttaaagcttaa
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