Tolypothrix sp. PCC 7712: HGR01_21545
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Entry
HGR01_21545 CDS
T11261
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
toz Tolypothrix sp. PCC 7712
Pathway
toz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
toz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGR01_21545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
toz03019
]
HGR01_21545
03400 DNA repair and recombination proteins [BR:
toz03400
]
HGR01_21545
Enzymes [BR:
toz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HGR01_21545
Messenger RNA biogenesis [BR:
toz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HGR01_21545
DNA repair and recombination proteins [BR:
toz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HGR01_21545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SecA_DEAD
AAA_22
SNF2-rel_dom
AAA_30
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
UYD24077
LinkDB
All DBs
Position
complement(5402238..5403938)
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AA seq
566 aa
AA seq
DB search
MNDSFSALREILKTGKISEDISNVSEPCHRRLLDALQNSPGSGDIVSLVRHVLRREDAKQ
GGSSPTYLQIPRKPPFLDSTIWEQASITVYGEEEEYYLISARPWQPEWLDLADQYPPDTP
LLDEKPRRNYKPVAGDPFLQLVDLNTYRSIGQREAIRAVLTAPDNSTLIINLPTGAGKSL
CAQLPALLNSRNNNGVSVVVVPTTALAIDQERALKSFVHHATAYYSDDTVEGKERREGIR
DRIRAGTQRIIFTSPESLMDSLAPALYEAAKRGILRYFIIDEAHMVEQWGDDFRPAFQEI
PGLRRDLLRLSSFNTLLLTATLTESCLDTLETLFGQDLQVISAVQLRPEPAYWFQRCENE
EVRKQRLLEAVSHLPRPLIIYGTKVKDVEDWRRELTRAGFNRTDIMTGKSTSQQRLQLIE
KLRAGKIDIVVATSAFGLGIDQADVRAVIHVCIPETIDRFYQEVGRGGRDGKASLSLTLY
TTEDFNIAHGLNEKSTITIERGLQRWQSMFAKKEALKNGRYRVPIDNPPSLLEKDIDMQS
DKNRAWNIRTLTLINRANLIEIDSAE
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaatgattcattctcagcacttcgggaaattctcaaaacaggtaaaatttctgaagat
attagtaatgtttcagaaccttgtcatcggcgcttattggatgcgctgcaaaactcgcct
gggtctggggatattgttagcctagtgcgtcatgtgttgcgacgcgaggatgcaaaacag
ggtggaagttctccaacttatctccaaatacctcgaaaaccgccttttctcgatagcact
atttgggagcaggctagcataaccgtatatggtgaagaagaagaatactatctcatcagc
gcccgtccttggcaaccggaatggcttgaccttgctgaccaataccccccggatactccc
ttacttgatgaaaaacctcgacggaattataaaccagttgcaggcgacccgtttttgcaa
ctcgtagatttaaacacatatcgcagtatcggacagcgcgaagcaattcgtgcagttttg
actgctcctgataattcaactttaattattaacttacctacgggtgcgggaaaaagcctt
tgcgctcaactacctgcattgctgaactccagaaacaataatggtgtcagcgtggtagtt
gtcccgactactgcgttagctattgaccaagaacgggcattgaaatcttttgtacaccat
gccacagcgtattatagcgatgatactgtggagggtaaagaaagaagagaagggatacgc
gatcgcattcgcgccggaactcaaagaataatttttacctctcctgaaagtttaatggat
tctctggcacctgctctgtatgaagcagccaagcggggaatattaaggtattttattatc
gatgaagcgcacatggtagagcaatggggagatgattttcgtcccgcatttcaagaaatt
cctggtttgcgaagagatttattgcgtcttagctcttttaatactttattgctaacagca
acattaacagaatcctgtttagacaccctggaaacattatttggtcaagatttacaagtt
atatctgccgtacagttgcgaccagagcctgcttattggtttcagcgatgtgagaatgaa
gaagttagaaaacaaagactacttgaggcagtttctcatcttcctcgcccgttaattatt
tacggtactaaagttaaagatgtcgaggattggagacgagaattaacccgcgctgggttt
aacagaactgacataatgacaggtaaatctacctctcaacaaaggttacaacttattgaa
aaattgcgtgcaggaaagattgatatagttgttgctacttctgcttttggattaggtata
gaccaagcagatgtcagagcagtaattcacgtttgtattcccgaaactattgaccgtttc
tatcaagaagttggacgcggaggaagagacggtaaagcatcattatcgctcacattatat
acaacggaagacttcaacattgctcatggtttaaacgaaaaatcgacaattactatcgag
agaggattgcagcgttggcaaagtatgtttgcaaaaaaagaagctttaaaaaacggcaga
tatcgcgtacctattgataatcctccgtctttgctagaaaaagatattgatatgcaaagt
gacaaaaatagggcttggaatatccgcactttgacgctgattaaccgagcaaatctaatt
gaaattgactcagcagaatag
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