Treponema pallidum subsp. pallidum Nichols: TP_0111
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Entry
TP_0111 CDS
T00016
Name
(GenBank) RNA polymerase sigma-54 factor (rpoN)
KO
K03092
RNA polymerase sigma-54 factor
Organism
tpa
Treponema pallidum subsp. pallidum Nichols
Pathway
tpa02020
Two-component system
tpa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tpa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TP_0111
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TP_0111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpa03021
]
TP_0111
Transcription machinery [BR:
tpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TP_0111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_IclR
HTH_24
HTH_Tnp_ISL3
HTH_Crp_2
HTH_3
HTH_26
Motif
Other DBs
NCBI-ProteinID:
AAC65101
UniProt:
O83149
LinkDB
All DBs
Position
126974..128401
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AA seq
475 aa
AA seq
DB search
MQQLVQQQRLVLNQRLVHGLCLLQLSRGDLKTEVLRAVQRNPLLEIRPSSARRTGKACYL
SLGDRRERMRARDRFQQLLENQPDKQVDNIRAVLREQVFYQKHEAIVLDLACAFIQMLDD
HGFFSISPAIFQNMCGSMPTALQEKIPQAIALIQRLEPQGCAVFNFKESLAVQARLRFER
FSDPLYRCVINLLTHHSELLFCSDNMCDGRVSVHALTTQINSMGLCVQKVSSNDVKDILL
LIKELHPFPGKCVSNAQRADTNMLLEPDVLITKTAHGFVTQINCTGIPTVVFRNDYCMHS
KAAEKNHALKACMHDALSLVSMLSYRERTLLDIAKTIVHYQCGFFDHGPAKLTPLRMTDV
AHRTGLSVSTVSRIVRDKWLQYGSQHFSLRYFFSPRVLSTEEYRDRSSLGQNYPSSPHSK
VSVKYRISRLIQEVRTQRISLSDRRIAQLLGEQGIKCARRTVNKYRSELRTCSSS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcttgttcaacagcagcggttagttctcaatcagcggttggtgcacgggctt
tgtttactgcagctttctcggggggatttgaagaccgaggttctccgtgccgtgcaacgc
aatccccttttagaaatacgtccttcgtccgctcgtcgcactgggaaggcttgttacctg
tcgctcggtgatagacgtgagcgcatgcgcgcacgtgatcgctttcagcaattgctggaa
aatcagcccgataagcaggttgacaatatccgagctgtattgcgtgaacaagttttttat
caaaaacacgaagcgattgtgctcgatttggcgtgcgcgtttatccagatgttagatgat
cacggttttttttccatatctcctgcgatctttcagaacatgtgtggtagtatgcccaca
gcccttcaagaaaaaataccgcaggcaatagcgctcattcaaagacttgagccacaaggg
tgtgctgtttttaattttaaagaatcattggcagtccaagcgcggctgcgctttgagcgt
ttctctgatcccttgtatcgatgtgttatcaatctactaacacaccacagcgaattgctt
ttctgctctgacaatatgtgtgatggacgcgtatccgtgcacgcgctgacgacacagatt
aatagtatggggctttgtgtgcagaaggtttcgtcaaatgacgtgaaagatattttgctc
ctcattaaggaactacatccctttccaggtaagtgtgtgtcgaacgctcagcgggctgac
acgaacatgttgcttgaaccagatgtattgattacaaaaactgcgcacgggtttgttaca
cagattaactgcacgggcatcccaactgtggttttccgaaacgattactgcatgcattca
aaagcggcagaaaaaaaccacgcgttgaaagcatgcatgcacgacgcgctcagtcttgta
agtatgctctcataccgggaacgtaccttgctggatatcgcgaaaacaatagttcactac
caatgcggtttctttgatcacggacctgcgaagctcacgcccctgagaatgacagatgtt
gcacacaggaccggattgagcgtttcaacagtgtcccgcatagtgcgcgacaaatggctc
cagtacggatcgcaacacttttccttaaggtactttttctcccctcgggttttatccacc
gaagaatatcgtgatcggtccagtcttggacagaattacccgagttctccgcactcaaaa
gtatcagttaagtaccggatatcacgtctcatacaagaggtacgaacgcagcgtatatcc
ctttccgaccgaaggatagcccagttgctcggtgagcagggcatcaagtgcgcaagacgt
accgtaaataagtaccgatcagaattgcgcacttgttcttcttcttaa
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