Treponema pallidum subsp. pallidum Nichols: TP_0254
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Entry
TP_0254 CDS
T00016
Name
(GenBank) transcription termination factor Rho (rho)
KO
K03628
transcription termination factor Rho
Organism
tpa
Treponema pallidum subsp. pallidum Nichols
Pathway
tpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TP_0254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpa03021
]
TP_0254
03019 Messenger RNA biogenesis [BR:
tpa03019
]
TP_0254
Transcription machinery [BR:
tpa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TP_0254
Messenger RNA biogenesis [BR:
tpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TP_0254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
ATPase_2
AAA_22
OB_RNB
AAA_16
Spore_III_AA
AAA
AAA_25
ResIII
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AAC65243
UniProt:
O83281
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All DBs
Position
265517..267076
Genome browser
AA seq
519 aa
AA seq
DB search
MKVSVGTVVGQGELGLEEGIVGNQIVSEDSAADVGECDAYGGRKKLVIRSRSRRRVVTPK
ALEVEKRPRRALRFKQNFCPEDAETSESSADVKGRARLLIDDLTEMGMHALRDFAVQRGI
SQEDVVVMKKSDIIFHVLKNHTENGGVIFASGSLEILPDGYGFLRSPQNSYLPGSDDIYV
SPSQIRLFNLKTGDTIYGQIRSPKEGERFFAMLRVETVNFEEVAKVQDRVPFDSLTPLYP
REKLNLETRTEDISTRVMNLFCPIGKGQRALIVAPPRTGKTILMQKIANAITQNHPEVYL
IVLLIDERPEEVTDMERTVDAEVISSTFDEQATRHVQIAEIVLERAKRLVEHRKDVVILL
DSITRLARAYNQTMPTSGKVLSGGVDSNALHKPKRFFGAARNVEEGGSLTIIATALIETG
SRMDEVIFEEFKGTGNMEINLDRRLSDRRLFPAVSIKKSGTRKEELLLTEEEMQRIWVLR
KVINPMDDAEIVELLIDKMRKTKNNEAFLRSMNTGAFSS
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtttctgttggtaccgtcgtcggacaaggagagttgggtttggaagagggaatc
gtggggaatcagattgtgtctgaggatagtgccgctgacgtgggggaatgcgatgcctac
ggcgggaggaagaagctcgtcatccgctctcgctcacggagacgagtggtgacgccaaaa
gcgctggaggtggaaaaacgtccgcgaagagccctacgctttaagcaaaatttctgccca
gaagatgcggaaacaagtgagtcttccgccgacgttaagggtagggcgcgtttgctgatt
gatgatttaactgagatggggatgcatgccctgcgtgattttgcagtacagcggggtatc
tctcaagaagacgtggttgtcatgaaaaagtcagatatcatctttcacgttcttaaaaat
cacactgagaatggtggcgttatctttgcttctggctcgctggagatattgcctgacggg
tatggttttttgcgttcacctcagaacagttatttgcccggttccgatgacatctacgtc
tctccaagtcagattcgcctgtttaatctgaaaacgggcgacaccatctatgggcagatt
cgctcccctaaggagggagagcgtttctttgcaatgctccgcgtggaaacggtaaacttc
gaagaagtagcaaaggtacaggaccgtgtccctttcgacagtcttacccctttgtacccg
cgggaaaagctgaatttagaaacaagaacggaagatatctcaacgcgtgtcatgaacttg
ttctgtccgatcggaaaggggcagcgtgcgctgattgtagcgccgccgcgtacgggaaag
acgattctcatgcagaaaattgcaaatgccatcacgcaaaatcatcctgaagtttatctt
atcgtgctgctcatcgatgagcgtcctgaagaggtaaccgacatggagcgtacggttgat
gctgaagttatttcttctacgttcgatgaacaggctactcgccatgtacagattgcagag
atagtgcttgagcgcgcaaagcgattggtagagcaccggaaggacgtggtgattttgctt
gactcgattacgcgtctggcgcgtgcctataaccaaacgatgccaacttcaggtaaagtg
ttgtcggggggagtggattcaaatgctctgcacaaaccgaaacgcttctttggtgcagct
cgcaatgtggaggaaggaggaagtctgacaatcattgccactgcgcttattgaaacaggc
agtaggatggatgaggttatttttgaggagtttaaaggtacggggaatatggagataaat
ctcgatcgtcgcctttcggatcggcgcctatttcccgcggtgagtattaaaaagtctggt
acgcgtaaggaagagttgctcctgacggaggaagaaatgcagcgtatttgggtgttgcgt
aaggtaatcaatcctatggacgatgcagaaattgtggaattgttaattgataagatgcgt
aaaacaaagaacaacgaggcatttttgaggtctatgaatacgggtgcgttctcctcctga
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