Treponema pallidum subsp. pallidum Nichols: TP_0394
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Entry
TP_0394 CDS
T00016
Name
(GenBank) DNA topoisomerase I (topA)
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tpa
Treponema pallidum subsp. pallidum Nichols
Brite
KEGG Orthology (KO) [BR:
tpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpa03032
]
TP_0394
03400 DNA repair and recombination proteins [BR:
tpa03400
]
TP_0394
Enzymes [BR:
tpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TP_0394
DNA replication proteins [BR:
tpa03032
]
Prokaryotic type
DNA Topoisomerases
TP_0394
DNA repair and recombination proteins [BR:
tpa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TP_0394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
DUF2996
Romo1
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AAC65378
UniProt:
O83409
LinkDB
All DBs
Position
418604..420799
Genome browser
AA seq
731 aa
AA seq
DB search
MEVRGLQPKRQKTFARKHLVIVESPAKAQTIEKYLGTQYVVRASMGHVIDLPKSRLAIDI
EHDFQPEYITVRGRAQCLKELRTLSKQSLQVFLASDRDREGEAIAYHLAQSIQAYCDTPI
KRIVFNEITPHAIRAAIGHPVPIDTAKVNAQKARRVLDRLVGYHLCPLLWHKVKNGLSAG
RVQSVALRLICEREVEVKRFVPEEYWTVEGTFEKDKKSFSALLILIQGKKAVFKSKQEAT
SAIGLFSQSEARVSQIRSFEKNVRPKQPFTTSTLQQCAANRLGFTSRKTMQVAQQLYEGV
SLGTHRVGLITYMRTDSVRVSEAAVKEVRAWIATHFSDALPGTPNRYAAKGKSQDAHEAI
RPTYVAHTPERIKAHLTRDQIRLYTLIWERFVASQMTDARVRSLTFEITAGPAVFSATET
QVIEQGFYRVLKMLSPKDLSKAVLPPTKEGEVVALHNVQSVQHFTQGPVRYTDASIVKML
EEKGIGRPSTYAPTISVLLDRYYVTRIQKQLMPTPLGKVISDLLTTYFHDVVDVSFTARM
ESKLDEVEEDKIKWNCVIADFYPAFSEKVSTVMKDLNSMRGVFDEKTDVVCSQCGDTMVK
KLGRFGFFLACGKFPECRNTQPVPLAKCPRPACDGNIVGKKTRGRKEFYGCTRFPVCDFV
THFKPTFAVCPQCRCFLVEKSNRRVGTYTACVNPECRYVSPTRKNLSLGKEAVLDGSHRG
AQDKGAVQHYE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgcgtgggctacaaccgaaaaggcagaagacatttgcgcggaagcatttggtt
attgtggaatctcctgcgaaggcgcagaccatcgaaaaatatctgggaacgcagtacgtg
gtgcgagcgtccatgggccacgttattgacttgccaaagtctcgtttagctattgatatt
gagcacgatttccagcctgagtacattacagttcgtggtcgtgcgcagtgtttaaaagag
ttgcgcaccctatctaagcagtcactgcaagtgtttcttgccagcgatcgtgaccgagag
ggggaggcgattgcgtaccaccttgcacagtctatccaggcgtattgtgatacgccgatc
aaaaggatcgtgtttaatgaaattacaccgcacgcgattagggcggcaattggccatccg
gttccaatagataccgcaaaggtcaatgcacaaaaggcgcggcgcgtactggaccgtttg
gtaggataccacctatgtccgctcctgtggcataaggtgaaaaacgggttgtctgcagga
cgtgtgcagtcggttgcacttcgtcttatctgtgaacgagaagttgaagtaaagcgcttt
gttccagaagaatactggacggttgaaggaacgtttgaaaaggataaaaagtcattttct
gcactactgatactgattcaagggaaaaaggctgtattcaaaagcaaacaggaggctaca
agcgctatcggtcttttttctcagagtgaggcacgagtttctcaaatacgcagttttgaa
aaaaatgttcgaccgaagcagccctttactacctctacgttgcagcaatgcgctgccaat
aggctcgggtttacctcgcgtaaaacgatgcaggttgcgcagcagctctatgaaggcgta
tctcttggtacccaccgcgtggggctcattacatatatgcgtacagattcggtgcgcgtt
tctgaagctgctgtaaaggaagtgcgcgcgtggatagcaacgcatttttctgacgcactg
ccgggtactcccaatcggtacgctgcaaagggaaagtctcaggacgcacatgaggcgatt
cgaccaacatatgttgcccacactcctgagcggattaaagcgcaccttacgcgtgatcaa
atacgtctgtacacgttgatttgggagcgttttgttgcaagtcagatgacagatgcaaga
gtgcgcagtttgacgtttgaaattaccgctggcccggcggttttcagtgcaactgaaacg
caggttattgaacagggattctaccgtgtactgaaaatgttatcccccaaagatctctct
aaagctgtacttccccctacgaaggaaggtgaggtagttgcactacataacgtgcagtcc
gtacagcactttacgcagggtcctgttcggtacacggatgcaagtatcgtaaaaatgttg
gaggaaaagggaattgggcgcccttcaacgtatgcaccgactatttcagtactgctggat
cgctattatgtaactcgtattcaaaaacagctaatgccgaccccattgggaaaggtcatt
agtgatcttctcaccacctattttcatgatgttgttgatgtaagttttaccgcgcgcatg
gaaagtaaactcgatgaggtggaggaagataaaatcaagtggaattgtgtcattgcggat
ttctatcctgctttcagcgaaaaggtttcaacggtgatgaaagatcttaacagcatgcgc
ggtgtgttcgatgagaaaacagatgtggtgtgtagtcagtgtggtgatacgatggtgaaa
aaactgggcaggtttggatttttccttgcatgcggaaagtttcctgagtgtagaaatact
cagcctgtccctcttgcaaagtgtccgcgtcctgcgtgcgatgggaatatcgtggggaaa
aaaacaaggggaagaaaggaattctatggctgcacgcgtttccctgtctgcgattttgtc
actcactttaaaccgacctttgcagtgtgtcctcagtgtcgatgctttttggttgaaaaa
tcaaatcgcagagtcggcacatatactgcgtgtgtaaaccctgagtgtcggtatgtatct
cctactcgaaaaaatctttctctgggaaaggaagctgtcttggatggtagccacaggggg
gcacaggataaaggagcagtgcaacattatgagtaa
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