Treponema pallidum subsp. pallidum Nichols: TP_0514
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Entry
TP_0514 CDS
T00016
Name
(GenBank) excinuclease ABC, subunit A (uvrA)
KO
K03701
excinuclease ABC subunit A
Organism
tpa
Treponema pallidum subsp. pallidum Nichols
Pathway
tpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TP_0514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpa03400
]
TP_0514
DNA repair and recombination proteins [BR:
tpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TP_0514
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TP_0514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_21
nSTAND1
AAA_23
RsgA_GTPase
AAA_25
nSTAND3
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AAC65502
UniProt:
O83527
LinkDB
All DBs
Position
550459..553341
Genome browser
AA seq
960 aa
AA seq
DB search
MGSAARNLCIKGAREHNLKNIDVMLPRDALVVISGLSGSGKSSLAFDTIFAEGQRRYVES
LSAYARQFLGRLDKPDVDSIEGLSPAIAIEQKTTQRNPRSTVGTVTEIYDYYRLLFARIG
RAHCPHCAREIKEQTVDQIVDTLMTVPSGSRIQLLAPVVRGKKGTHHKVLEAARKDGFVR
ARIDGALLHLHERISLDKQKKHSIDIVVDRIQLSDTVRKRLTESVETTLGYADGLLTVLV
QGENSGTVSGKIETSALLPSELFFSQKNACAHCNVSVPELQPRLFSFNAPFGACPSCAGL
GIMQTFDLDRIVPDQNRSFNEGAFLPFKPEHEWNRVRFAALAEKYHFSLDDPVRNLSKHA
LDIILHGSGSEALEFSHERKDGSRTARYIKPWPGIFSELHRRYAESCTHSQREVYERYLS
VRTCEACRGMRLKPESLAVTIEKKNIHALSALSVDDSCEFFKTLHLTEVEATIAQQILKE
ITDRLEFLQNVGLGYLTLERAAATLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQR
DNERLIQTLLHLRDLGNTVLVVEHDEQTLRVADYIVDLGPGAGVHGGYVVAAGSPPEVMQ
VQASLTGQYLAGAITLPIPAVRRTGNGNVLTVHDVHEHNLQHISVRIRLGTFTCITGVSG
SGKSTLLIDVLYPALYNRVMNGRLPEGKFSSIEGTEHLDKVIYVDQSPIGRTPRSNPATY
VGVFTDIRMLFSQVPEAKMRGYKPGRFSFNVPGGRCEHCKGDGVITIEMNFLPDVYITCD
VCHGTRFNRETLAVFYKGKNISHVLDMTIEEARSFFSAVPPIVRKLEALCSVGLGYVRLG
QSALTLSGGEAQRVKLALELSKRATGKTLYIFDEPTTGLHFADIIQLMEVVQRLVDQGNT
VVMIEHNMDVIVQADCVIDLGPEGGMHGGTIVAQGSPEAVSQITESRTGWYIKEVLCKKT
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
gtgggctctgctgctcgtaatctgtgtataaagggtgcgcgtgagcataatctgaagaat
attgatgttatgttgccgcgagatgcgcttgtggtgatctccggtctttctggttcaggc
aagagttcgcttgcgtttgatactatttttgcagaaggacagcgtcggtatgtggagtcc
ctttctgcatacgctcgccagtttttaggtcggttagataagccggatgttgactctatc
gagggtctttctcctgcgattgccatcgagcaaaaaactacgcagcgtaaccctcgctca
acggttggtactgtcacagaaatttatgactactatcgtctgctgtttgcccgcatagga
cgcgcgcattgtccgcactgtgcgcgggagatcaaggaacaaaccgttgaccaaattgtt
gataccctcatgaccgtgccgtcgggaagcagaattcagttgcttgccccggtggtgcga
ggaaaaaaaggtacacaccacaaggtcttggaagctgcacgcaaagatggttttgtacga
gctcgtattgacggggctttgctccacttacacgagcgcatttcgttggataagcaaaaa
aagcattctatcgatatagttgtcgatagaattcaattgtcagatacagtacgtaaacga
ttaacagaatcagtagagacgacgctaggctatgcagatgggctgttgaccgtcttagtg
cagggagagaattctgggaccgtttccggaaagatagaaacatctgctctcctgccgtct
gagttatttttttcgcaaaaaaacgcgtgcgcgcactgtaatgtctccgtacccgaattg
cagcctcgcttgttctcttttaacgcaccttttggtgcctgtccgagctgtgcaggactg
gggattatgcagacatttgatttagatcgcattgtccctgatcaaaaccgttcttttaac
gagggtgcttttttgccatttaaacctgagcatgagtggaaccgtgtgcggtttgctgca
ctcgcagaaaagtaccatttttctctcgatgatccggtacgcaatctgtcaaaacacgca
ctggatattatcctgcatggaagtggcagcgaggctcttgagttttcccatgaacgaaaa
gatggctctcgtaccgcacgctacattaagccgtggccgggaatttttagcgagctgcac
aggagatacgcagagtcatgtactcactcacagcgcgaggtatatgaacggtatttatcg
gtgcgtacatgtgaagcgtgtcgagggatgcgcttaaagccagagtcgcttgcggtgact
atagaaaaaaaaaacatccacgcactcagtgcgctgtctgtagatgattcgtgtgagttt
tttaaaactctccatctgacagaagtagaagcgacaattgcgcaacagatcctgaaagaa
attaccgatcgcctagagtttcttcagaacgtgggtcttggatatctcaccttggaacgg
gctgctgccacgttatccggcggagaagcacaacgaattagactggcaacccagataggt
tcgcgccttacaggggttttgtacatactggacgaaccgtctattggtttgcatcagcgg
gataatgaacgactgatccaaacgcttcttcatttgcgtgatttgggaaacacagtgctt
gtggtagagcacgatgagcaaacgctccgcgtagcagattatattgtagatctcggcccc
ggtgcgggtgttcacggaggatatgttgtcgccgcaggcagtccacctgaagttatgcag
gtgcaagcaagtcttactggtcagtatcttgccggtgcaattacattacccattcctgca
gtacggagaacgggaaatggaaatgttcttacggtgcatgacgtccatgaacataacttg
caacacatttctgtacgtattcgactcggtacttttacctgcattaccggagtatccggc
tcgggtaaatcaacgcttttaattgatgtgctatatcctgcgttatacaaccgtgtgatg
aacggcagacttcctgaaggaaaattttcctcgattgaggggacggagcatttagataaa
gtaatttatgtagaccaaagtcctatcgggagaactcctcgttcaaatcctgcaacttat
gtgggtgtgtttacagatattagaatgctgttctcccaggttcctgaagcaaaaatgcgg
ggatataaaccaggacgtttttctttcaatgttcctggaggacggtgtgagcattgtaaa
ggtgatggcgttatcactattgaaatgaattttttacctgatgtgtacattacctgtgat
gtgtgtcacggcacccggtttaaccgggagacattagctgtgttttataagggcaagaac
atttcccatgtgctggacatgacgatcgaagaagcgcgttcttttttttctgctgttcct
cctatagtacgaaagctagaagctctctgctcggtggggcttgggtatgtgcgcttagga
cagtctgctctgacgttgtcagggggagaagcccagcgcgttaaacttgcacttgagctt
tcaaagcgtgcgacaggaaaaactctctatatctttgacgaacctactaccggattgcat
tttgccgatatcatccaattaatggaggttgttcaacgcttggtagatcagggaaatacg
gttgtgatgatcgaacataacatggatgttattgttcaggcagactgtgttatcgattta
ggtcctgaaggaggaatgcacggtggaactatcgttgcacagggaagccctgaagcagta
tcccagataactgagtctcgcaccggttggtacatcaaagaggtgctgtgtaaaaagaca
tga
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