Treponema pallidum subsp. pallidum Nichols: TP_1028
Help
Entry
TP_1028 CDS
T00016
Name
(GenBank) DNA helicase II (uvrD)
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tpa
Treponema pallidum subsp. pallidum Nichols
Pathway
tpa03420
Nucleotide excision repair
tpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TP_1028
03430 Mismatch repair
TP_1028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpa03400
]
TP_1028
Enzymes [BR:
tpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TP_1028
DNA repair and recombination proteins [BR:
tpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TP_1028
MMR (mismatch excision repair)
Other MMR factors
TP_1028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
HXXSHH
AAA_11
AAA_12
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AAC65978
UniProt:
O83991
LinkDB
All DBs
Position
complement(1121029..1123041)
Genome browser
AA seq
670 aa
AA seq
DB search
MESYLSALNEAQRQAVCHYGSPLLILAGAGSGKTRVITTKIAHLIRSRQVRPEQILAVTF
TNKAAREMRTRACALESAAQGATICTFHALGVWILRRYAVRLGLNPHFSIYDDHDVRALL
PKILPHCDHSRAGMLARGISQAKDYGLDCASFESVHARVSAPACAARAVLGDRQFAHAYA
CYHRRMREMGTVDFGDLIMLPVQLLREHQDVAEQLHARWQVVMVDEYQDSNVAQFHFLQV
LTGAHTYLCVVGDDDQSIYRFRGAEVKNILTFPEFFQNTQIIRLEYNYRSTDAILRVADS
VVKKNQDRLGKALIAQRTGGTKPRLFLLNNQDEEAALCVHLIQEARARGIPYADWAILYR
VNAQSLSFEQCFLRNRIPYRIVGTLKFYSRAEVKDVLAFLQLIVNGSDELALRRVLNKPP
RGIGEKTQDALFVCAQQAAITDFTTLQSTHLTALGTRARQKVSSFLSLLRALRARMPQAP
AAGEEARTSAPPEEPVEERTHDAEGLARFVSVVMEHTGLEEWYRQKDEEEGTQCAVNVQE
LMNAASLYACSHEGLVSFLEHIQLDQNMADEGGAADAVHLITIHNTKGLEFRRVILTGLE
NGVFPRDDEADIQEERRLMYVACTRAMDSLYLTACAYRRMWGRHTAMKPSRFLTELDSAL
LEITDPRHFA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtggaatcctacctgagcgcgctcaatgaggcgcagcgtcaggccgtttgccattatggc
agcccgcttcttatccttgccggcgcaggctcaggaaagacgcgcgttatcaccaccaaa
atcgcccatcttatccgttcccggcaggttcgccccgagcagattctggcagtaaccttt
accaataaagcggcgcgtgagatgcgcacgcgtgcctgcgcgcttgagtctgccgcgcag
ggggcaactatctgtaccttccacgcactgggggtgtggatcctgcgtcgctatgcagtc
cgtctgggattgaacccccattttagtatttatgacgaccatgacgtccgtgcactcttg
ccaaaaatcctgcctcattgcgatcacagtcgggcaggcatgctcgcgcgtggaatttct
caggcaaaggactatgggctcgactgcgcctcgtttgagtcagtgcacgcgcgtgtctcc
gctcctgcatgcgctgccagagccgttctgggtgacaggcagtttgcgcacgcatatgcg
tgctaccatcggcgtatgcgcgaaatgggaacggtagactttggggatctgattatgctt
ccggtgcagctcttgcgtgagcaccaggacgtcgccgaacagctgcatgcacggtggcag
gtggtcatggtagatgagtatcaagactcaaacgtggcgcagtttcatttcttgcaggtg
ctcaccggtgcgcacacctatctttgtgtggtaggggacgacgatcagtccatctatcgc
tttcgcggagcagaggtaaaaaatatcttgaccttccctgagttctttcaaaatacccag
attatccgcctggagtacaactaccggtccacagacgcaattctgcgtgttgctgattcg
gtagtgaaaaaaaaccaagaccgcttaggaaaggcgctgattgcccagcgcacgggaggt
actaagccgcgcctgttcttgctgaataatcaagatgaagaagctgcgctgtgcgtgcac
ctcattcaagaagcgcgtgcgcgcggcatcccatacgcggattgggcgattttatatcgg
gtaaatgcacagtcgctgagttttgaacagtgttttttgcggaatcgcattccgtatcgc
attgtcggcacgctcaaattctacagtcgcgcagaggtaaaagacgtgctggcgtttctc
cagctcatagtcaatggctcagatgaactggccctccggcgggtgctgaataagccgcct
cggggcattggagaaaagacacaagacgcattgtttgtctgtgcacagcaggcagccata
actgattttaccacactccagtccacccacctgaccgcgcttggcacgcgtgcgcggcaa
aaggtcagtagctttctgtcgctgttacgtgcgctgcgtgcacgcatgccacaggccccc
gcagcgggagaagaagctcgcaccagtgcgccgcctgaggagccggtagaggagcgcacc
cacgatgcagaaggacttgcgcgctttgtttctgtggtaatggaacacacggggctggaa
gaatggtatcgacagaaggatgaggaagaagggacgcagtgcgcggtcaacgtgcaggag
ttaatgaacgcagcgtcactgtatgcatgttcgcatgaggggttagtgagtttcctagaa
cacatccaattggaccaaaatatggccgacgagggaggagcggctgacgcagtgcacttg
atcaccattcacaatacaaaagggctggagtttcgacgggtgattctgaccggactagag
aacggggtgtttccgcgtgatgacgaagcagatatacaggaagagcggcgtttgatgtac
gttgcctgcacgcgggctatggatagcttataccttaccgcgtgtgcgtaccgcagaatg
tggggacgacacacggcgatgaagcccagccgctttttgaccgagcttgactccgcgctg
ttagaaataaccgatccgcgacactttgcctaa
DBGET
integrated database retrieval system
