Tenacibaculum pacificus: PG913_00985
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Entry
PG913_00985 CDS
T08859
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tpac
Tenacibaculum pacificus
Pathway
tpac03410
Base excision repair
tpac03430
Mismatch repair
tpac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PG913_00985 (recJ)
03430 Mismatch repair
PG913_00985 (recJ)
03440 Homologous recombination
PG913_00985 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpac03400
]
PG913_00985 (recJ)
DNA repair and recombination proteins [BR:
tpac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PG913_00985 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PG913_00985 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PG913_00985 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
AA_permease_N
Motif
Other DBs
NCBI-ProteinID:
WBX73864
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Position
complement(227173..228858)
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AA seq
561 aa
AA seq
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MRWTLKKEPDLLKVNQLAKELSVEKTLAKILVQRNIDTFDKARKFFRPSLDDLHDPFLMK
DMHIAVQRIEKAIANNENILVFGDYDVDGTTAVSLLSSYLKTIHPKVATYIPDRYAEGYG
VSYMGIDFADDNDFSLIIALDCGIKAIDKVAYATEKNIDFIICDHHKPGKEIPKAVAVLN
PKQIDCFYPYDELCGCGVGFKLIQALGSKRNQTIDDLMPYLDLVATAIAADIVPMTGENR
TLAYWGLQVINSKPRNGIKAIIHQLDKKELTITDVVFIIAPRINAAGRMKHGNYAVELLT
EIDFDSAIEFASAIEKFNADRKGLDKKITEEALLQIENNNETEKFTSVVFDENWHKGVIG
IVASRLIETYYRPTLVFTKSGDKLAASARSVKGFDVYNALEQCAEFIEQFGGHKYAAGLT
LVPEQYENFKNKFEEVVKNTIDKNLLIPEISIDAELDLSEISPKFFRIIQQMAPFGPLNM
RPTFSTTAVRDNGYGKQVGADKNHLKLNIIYGADNRTYNSIGFSLGKKLPLIQNEFDIAY
ALDENTWNGNTSIQLLLKDIK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggactttaaaaaaagaacccgatttattaaaagtaaatcaattagctaaagag
ttatctgttgaaaaaacattggctaaaattttagtacaacgcaatattgatacttttgat
aaagctcgaaaatttttccgtccttctttagatgatttgcacgacccttttttaatgaaa
gatatgcatatcgccgtacaacgaattgaaaaagccattgcaaacaacgaaaatattttg
gtttttggagattatgatgtagacggaacaacagctgtttcgttactttcttcttattta
aaaacaattcacccgaaggttgctacatatattcctgatagatatgccgaaggttacgga
gtttcttacatgggaattgattttgctgatgacaatgatttctctttaattattgcctta
gattgcggaattaaagccattgataaagttgcttacgctaccgaaaaaaacatcgatttt
attatttgcgaccatcataaacctggaaaagaaattccgaaggctgttgctgttttaaat
ccgaagcaaatagactgtttttatccttatgatgaattatgtggttgtggcgttggtttt
aaattgattcaggctttaggatcaaaaagaaatcaaactattgatgatttaatgccgtat
ttagatttggtagccactgcaattgctgccgatattgttccaatgactggcgaaaataga
actttagcttattggggtttacaagtaattaattcaaaaccacgaaacggaattaaagca
ataattcatcaattagataaaaaagaattaaccattaccgatgttgtttttataatcgct
ccgcgaataaatgcagctggtagaatgaaacacggtaattatgccgtggaacttttaacc
gaaatagattttgattcggctattgaatttgcttcagcaattgaaaaatttaatgctgat
agaaaaggactcgacaaaaaaattacagaagaagctttacttcaaattgaaaacaataat
gaaactgaaaaatttacttcagttgtttttgatgaaaattggcacaaaggcgttatcgga
attgtagcatcaagattaattgaaacttattacagacctactttagtttttacaaaaagt
ggcgataaattagccgcttctgcccgttcagtaaaaggatttgatgtatataatgcctta
gaacaatgtgcagaatttattgaacaatttggtggacataaatatgctgcgggtttaact
ttagtccctgaacaatacgagaattttaaaaataaatttgaagaagtagtaaaaaacact
atcgataaaaacttattaattcctgaaattagtattgacgccgaattagatttatcagaa
atatctcctaagttttttagaattattcaacaaatggcaccttttggccctttaaatatg
agacctactttttctacaactgccgttagagataatggttatggaaaacaagtaggagct
gataaaaatcatttaaaactgaatattatttatggagctgataatcgaacttataattct
attggttttagtttaggaaaaaaactacctttaattcaaaatgaatttgatattgcatac
gcactagatgaaaatacttggaacggaaatacaagtattcaactgcttttaaaagatata
aaataa
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