Tenacibaculum pacificus: PG913_03095
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Entry
PG913_03095 CDS
T08859
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tpac
Tenacibaculum pacificus
Pathway
tpac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PG913_03095 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpac03021
]
PG913_03095 (rpoB)
03400 DNA repair and recombination proteins [BR:
tpac03400
]
PG913_03095 (rpoB)
Enzymes [BR:
tpac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PG913_03095 (rpoB)
Transcription machinery [BR:
tpac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PG913_03095 (rpoB)
DNA repair and recombination proteins [BR:
tpac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PG913_03095 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
RnfC_N
AGA2
Motif
Other DBs
NCBI-ProteinID:
WBX74221
LinkDB
All DBs
Position
671247..675059
Genome browser
AA seq
1270 aa
AA seq
DB search
MATINTTERINFASSQLGTDYPDFLDIQVKSFQDFFQLQTKADERGEEGLYKTFMDNFPI
TDTRNQFVLEFLDYFVDPPRYSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIVQDV
YLGTIPYMTNSGTFIINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIE
FATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKAGLKKVLGRK
LAARVLKTWHEDFVDEDTGEVVSIERNEIIFDRDTIIEKDHIDEIIDAGAKTILLHKVDN
DMADYAIIHNTLQKDPTNSEKEAVEHVYRQLRNAEPPDEETARGIIEKLFFSEQRYSLGE
VGRFRMNTKLQLNEPIDQKVLTKNDIITIIKYLIELINSKAEVDDIDHLSNRRVRTVGEQ
LAGQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFA
KVNSLGFIETPYKKVIEGNVDVNQEHIYLSAEEEEGMKFAQSNLEVSAAGDFVGDKLISR
EGGDFPVVTPTEIDYMDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPES
PIVGTGLERRVAKDSRILINAEGPGVIEYVDANKIRIKYDRSDEERLVSFESDDISYNLI
KFRKTNQGTNINLKPIVKVGDRVEEGQVLCEGYATQKGELALGRNMKVAFMPWKGYNFED
AIVISEKVVREDIFTSIHIDEYSLDVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIG
AEVNPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVINKKLF
QRAVKDKTKRARDKEAIATLEASYVHRFEDLKDLLIEKLFNLITGKTSQGVFNDLGEEVL
PKGKKFTQKMLNSVGDFTHLHGTWTTDKDLNRLVVELVHNYKIKVNDLQGSLRREKFTIS
VGDELPAGILKLAKIYVAKKRKLKVGDKMAGRHGNKGIVARIVRAEDMPFLADGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLDQKYATPIFDGANIDQINALTDQAGIPRYGHTY
LYDGGTGKRFDQPATVGIIYMIKLGHMIEDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSILREILTVKSDDVLGRAKTYEAIVKGETMPEPGLPESFNVLMHELK
GLGLDVKLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacgataaacactactgaaagaattaacttcgcatcatcgcaattaggaaccgac
tatccagattttcttgatatccaggtgaaatctttccaagattttttccaattgcaaact
aaagctgatgagcgaggtgaagaaggtttgtataaaaccttcatggataactttccgatt
acagacacccgtaatcaatttgtattagaatttttagactactttgtagatccaccaaga
tatagcatccaagaatgtattgaaagagggctaacacatagtgttcctttaaaagcaaga
ttaaagctttactgtacagatcctgaacacgaagattttgaaactattgttcaagatgtg
tatttaggaactattccttatatgacaaattctggaaccttcattattaatggagcagaa
agagttgttgtatctcaattacaccgttcaccaggtgtgttttttggacaatctttccat
gcaaatggaactaagttgtattctgcaagggtaattccttttaaaggatcttggatagaa
tttgcaacagatatcaatcaagtaatgtatgcttatattgatagaaagaaaaaactacca
gtaactacgttattcagagccattggttttgaaagagataaagatatattagaaattttt
gatttagcagaagaaattaaagtttctaaagctggattaaaaaaagtattaggacgtaaa
ttagctgctagagttttaaaaacttggcatgaagatttcgttgatgaagatactggtgaa
gttgtatctattgaacgtaacgaaattattttcgaccgtgataccattatagaaaaagat
catattgatgaaataatcgatgcaggtgctaaaactatcttattacataaggtagataac
gacatggccgattatgccatcattcacaatacactgcagaaagatcctacgaattctgaa
aaagaagcagtagaacacgtctacagacaattacgtaatgctgagccgccagatgaggag
acagcaagagggataattgaaaaattatttttctctgagcaacgttatagtttaggtgaa
gttgggcgttttagaatgaacaccaagttacagttaaatgagccgattgatcagaaggta
ttaactaagaatgacattattaccattatcaaatacttaattgagttaattaactcaaaa
gcagaagtagatgatattgatcacttatctaaccgtcgtgtaagaactgttggtgaacaa
ttagcaggtcagtttggtgtaggtttagctcgtatggctcgtactattcgtgaaagaatg
aatgtacgtgataacgaggtatttactcctattgatttaattaatgcaaagactttgtct
tctgttattaattcgttttttggaactaaccagttatctcaatttatggatcaaaccaat
ccattagctgagattacgcacaaacgtcgtttatcagcactaggacctggaggtttatct
agagaaagagcagggttcgaggttcgtgatgttcactatacacactacggacgtttatgt
ccaattgaaactcctgagggaccgaatattggattaatttcatctttagcagtatttgca
aaggttaacagtttaggttttatcgaaacaccttataaaaaggttatcgaaggaaacgta
gatgtaaaccaagagcatatatatttaagtgctgaagaagaagaaggaatgaagtttgca
caatctaatttagaggtaagtgcagctggagattttgttggagataaattaatttcaaga
gaagggggagatttccctgtggtaacacctactgaaattgattatatggatgttgcacct
aaccagattgcatctatatcagcatcattaattcctttcttagagcatgatgatgccaat
agagccttaatgggatcgaacatgatgcgtcaagcagttccattattgcgtccagaatca
ccgattgtaggtacaggattagagcgtagagttgcaaaagattctcgtattttaatcaat
gctgaaggacctggagttattgagtatgttgatgcgaataaaatcagaattaagtatgat
agatcagacgaagagcgtttagtaagctttgaatcagatgatatttcatataacttaatt
aagtttagaaaaacaaatcaaggtactaacattaacttaaagccaattgtaaaagttgga
gatagagttgaagaaggtcaagtactttgtgaaggatatgcaacacaaaaaggagaatta
gctttaggaagaaatatgaaagtagcctttatgccttggaaagggtataactttgaggat
gcgattgtaatttcagaaaaagttgttcgtgaagatatctttacttctattcatattgac
gaatattcattagatgttcgtgatacgaaattaggagctgaagaattaacaaacgatatt
cctaacgtttcagaagaggctactaaagacttagatgaaaacggaatgattcgtattgga
gcagaggtgaaccctggtgatatcttaattggtaaaattacaccaaaaggagaatctgat
ccaactcctgaagaaaaattattacgtgctatttttggtgataaagcaggtgatgtaaaa
gatgcatcattaaaagcttctccatcattaagaggtgtggtaattaataaaaaattattt
caacgtgctgtaaaagataaaacaaaacgtgctcgtgataaagaagctattgctacttta
gaagcatcttatgttcataggtttgaagatttaaaagatttattaattgaaaaattattt
aatcttattacaggaaaaacttctcaaggagtatttaatgatttaggagaggaagtatta
ccaaaaggtaaaaaattcactcaaaaaatgttaaattctgtaggtgattttacgcactta
cacggaacttggactacagacaaagacttaaatagattagttgttgaattagttcacaat
tataaaattaaagttaacgatttacaaggttctttacgtcgtgagaaattcacaatttct
gtaggagatgaattaccagcaggaatcttaaaacttgcaaaaatttatgttgctaaaaaa
cgtaaattaaaagtaggagataagatggcaggacgtcacggaaataaaggtattgttgct
cgtattgttagagccgaagatatgcctttcttagcagacggaacaccagtagatattgta
cttaacccattaggggtgccatctcgtatgaatattggtcagatttatgaaactgttctt
ggatgggcaggtcaaaaattagatcaaaagtatgctacaccaatttttgatggagcaaac
atcgaccagataaacgccttaactgatcaagcaggaattccacgttacggacatacatat
ttatatgatggaggtactggtaaacgtttcgatcagccagcaacggtaggtatcatttat
atgattaagttaggtcacatgattgaagataaaatgcatgcgcgttctattggaccttac
tcattaattactcagcaaccacttggaggtaaagctcaatttggaggtcagcgttttgga
gagatggaagtttgggcacttgaagcatatggtgcatcaagtatattaagagaaatctta
accgttaaatctgatgatgtattaggtagagccaaaacttacgaggcaatcgtaaaaggt
gaaactatgccagaaccaggtttaccagaatcatttaatgtattaatgcacgaactgaaa
ggtttaggattagatgttaaattagaggaataa
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