Tenacibaculum pacificus: PG913_05025
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Entry
PG913_05025 CDS
T08859
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tpac
Tenacibaculum pacificus
Pathway
tpac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG913_05025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpac03019
]
PG913_05025
03400 DNA repair and recombination proteins [BR:
tpac03400
]
PG913_05025
Enzymes [BR:
tpac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PG913_05025
Messenger RNA biogenesis [BR:
tpac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG913_05025
DNA repair and recombination proteins [BR:
tpac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PG913_05025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
WBX74554
LinkDB
All DBs
Position
1091160..1093358
Genome browser
AA seq
732 aa
AA seq
DB search
MNIEETELYGSLKKIFGFNQFKGLQEVVVKSILNNENTFVIMPTGGGKSLCYQLPALMKE
GTAIVVSPLIALMKNQVDAIRGISEQHGIAHVLNSSLNKAEIAQVKSDIEAGITKLLYVA
PESLVKEEYAEFLRGQNISFVAIDEAHCISEWGHDFRPEYRNLRNIIKQIDNVPIIGLTA
TATEKVQEDILKTLGMSDANVFKASFNRPNLFYEVCPKTKDIEKDIIRFIKQRMGKTGII
YCLSRKKVEEIAQVLQVNGINALPYHAGLDAKKRAKHQDMFLMEDCDVIVATIAFGMGID
KPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGYCLTFYSYKDIEKLEKFMANKPVAEQE
VGHALLQEVVGYAETSMNRRKYILHYFGEEFDAINGEGAELDDNMKNPKKKNEAQEQVKI
LLSVIRDTNEMYKPKEIVNTIIGAENALLKSHKTTTQPFFGIGKDKINHYWMALIRQILV
VDLIKKEIEQYGVLKLTEKGKQFLENPTSFMMTENHVYATDDAGIIISTTSPVAGAVDVK
LVKMLKDLRKSVGKRLGVPPYAVFQDPSLEDMALKYPMNLEELSKVHGVGEGKSRKFGKD
FVKIITSYVEENKIMRPDDLIVKSTGVNSGLKLFIIQNTDRKLPLEDISKSKGLAMNELI
KEMEAIVFSGTKLNIDYAVEDLLDEDQQEEIHDYFMESESDKIQEALDEFDGDYDEDELR
LMRIKFTSEIAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaggagacggagttatacggatcattaaagaaaatatttggttttaaccaa
tttaaaggtttacaagaggtcgttgtaaaaagtattttaaacaacgaaaatacatttgta
ataatgccaactggtggaggtaaatctctttgttatcagttacctgcattaatgaaagaa
ggtacagctattgttgtatcgccattaatagctttgatgaaaaatcaagtagatgctatt
agaggtatttctgagcaacatggtattgcacatgtattaaattcttctttaaataaagct
gaaattgctcaagtaaaatcagatattgaagcaggaattactaagttattatatgtagct
cctgaatcattagtaaaagaagaatatgccgagtttttaagagggcaaaatatttctttt
gtagctattgatgaagcgcattgtatttctgagtggggacatgattttagacctgagtac
agaaatttacgtaacattattaagcaaattgataatgtacctattattggtttaacagca
acagcaacagaaaaagtacaggaagatattctgaaaactttaggaatgagtgatgctaat
gtttttaaagcatcatttaatagacctaacttgttttatgaagtatgccctaaaacaaaa
gatatagaaaaagatatcattcgttttataaaacaacgaatgggaaaaacaggtattata
tactgtttgagccgtaaaaaagtagaagaaattgctcaagttttacaagtaaatggtatt
aatgcacttccgtatcatgcagggttagatgctaaaaaacgagcaaaacatcaagatatg
tttttgatggaagattgtgatgttattgttgcaacaattgcttttggtatgggaatcgat
aaaccagatgttcgttatgtaattcatcatgatattcctaaaagtttagaaagttattat
caagaaactggtagagctggtcgtgatggaggagaaggttattgtttaactttttactca
tataaagatatcgaaaaacttgaaaagttcatggctaataaacctgttgcagaacaggaa
gtaggacatgcgcttttacaagaagtagtaggttatgcagaaacatcaatgaatagacgt
aaatatattcttcattattttggagaagaatttgacgctataaatggtgaaggagctgag
ttggatgacaacatgaaaaatcctaaaaagaaaaatgaagctcaagaacaggtgaaaata
ttattgtcggttattagagataccaacgaaatgtataagcctaaagagattgttaatact
attattggtgcagaaaatgcattattaaaatctcataaaacaacaacacaaccttttttc
gggataggaaaagataaaataaatcattattggatggcgttaattcgtcaaatactggtt
gtcgatcttatcaaaaaagaaattgaacaatatggtgttttaaaattaacagaaaaagga
aagcagtttctagaaaatccgacatcatttatgatgacagaaaatcatgtatatgcaaca
gatgatgctggaataataatttcaacaacaagtccagtagcaggtgcagtagatgttaaa
ttggttaaaatgctaaaagatttacgtaaaagtgtaggaaagcgtttaggcgtacctcct
tatgcagtctttcaagatccttcattagaagatatggcattgaaatatccaatgaattta
gaagagttatctaaagttcatggtgtaggagaaggtaaatctagaaaatttggtaaagat
tttgttaagattataacaagctatgttgaagaaaataaaattatgcgtcctgacgattta
atcgttaaaagtactggtgtaaattcaggattaaaattatttatcattcaaaatactgat
agaaaattacctttagaagatatttcaaaatcgaaaggtttggcaatgaacgagctgatt
aaagaaatggaggcgattgttttttcgggaacaaaattaaatattgattatgctgttgaa
gatttgttagatgaagatcaacaagaagaaatacatgattattttatggaatctgaatca
gataaaattcaagaagctttagatgaatttgatggtgattatgatgaagatgaattgcga
ttaatgcgtatcaaatttacgagtgaaatagcaaattaa
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