Tenacibaculum pacificus: PG913_06615
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Entry
PG913_06615 CDS
T08859
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tpac
Tenacibaculum pacificus
Pathway
tpac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG913_06615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpac03019
]
PG913_06615
03400 DNA repair and recombination proteins [BR:
tpac03400
]
PG913_06615
Enzymes [BR:
tpac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PG913_06615
Messenger RNA biogenesis [BR:
tpac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG913_06615
DNA repair and recombination proteins [BR:
tpac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PG913_06615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WBX72592
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All DBs
Position
1464601..1466400
Genome browser
AA seq
599 aa
AA seq
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MSDKSIEILAHYWKHRSFRSPQQEIITAVLDGKDTIALLPTGGGKSICFQIPALINEGVC
IVISPLIALMQDQVDSLINKGIKATVISSGSSQDEIITLFDNIRFGKTKFLYISPERLQS
RFIQEKIKQLKVNLIAIDEAHCISEWGHDFRPSYQNISILKELQPKVPFIALTATATKKV
INDIIVSLKLDTPKIFKKSFYRKNLAYQIFETDDKLNKLNQIFTKTKAPAIVYVNSRAKT
KDIASYLNANGFKSCFYHGGLTFQEKELAFDSWISEKTPIIVATNAFGMGIDKPNVRVVI
HLNLPSSIENYIQEAGRGGRDGNKAFSVVLVNKNDIKKSEDSLETSLPIISDIKLVHRKL
YQHFQITIGEFIETAFDFNFLEFCTKYKLPSTKTYNVLQILNSNGIIELNANFQQKSTIH
FIVLSKQVVLYSQQNPSVKNFIQTVLRLYGGVFENPIKIDEFYIAKKTGITSWQVVEELE
RMQEKNILEYHKATNNSELFLLHPREDDKTINRVSKNINLYLTQKKQKHKDLIHFIENND
VCRSVQLLAYFNEDATKKCGICDVCLQHKKTFYINPKHIIKILDTKKGLSVSEICTLLH
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataaatcgatagaaatattagctcactattggaaacaccgttcttttagatca
cctcaacaagaaattataacggctgttttagacggaaaagacaccatcgctttattacca
acaggtggtggaaaatctatctgttttcaaattcctgcactaattaacgaaggcgtttgt
attgttatttcgccattaattgcgttaatgcaagaccaagttgatagccttatcaataaa
ggaataaaagcaactgtaatttcttcaggaagttctcaggacgaaataattacgcttttt
gataatatccgattcggaaaaacaaaatttttatacatttctccagaacgtttacagtct
cgttttattcaagaaaaaataaaacaactaaaagttaatttaattgctattgatgaagct
cattgtatttctgaatgggggcatgatttccgtccttcttatcaaaatatttcaatttta
aaagagttacaacccaaagttccttttatcgctttaacagcaacggcaactaaaaaggta
attaacgatattattgtttccctaaaacttgatactcctaagatattcaaaaaatctttt
tatcgaaaaaatttagcctatcaaatttttgaaacagatgataaactaaataaattaaat
cagattttcacaaaaacaaaagctcctgcaattgtttatgtcaattctagagcgaaaaca
aaagatattgctagttatttaaatgctaatggatttaaaagttgtttttatcatggagga
ttaacatttcaagagaaagaacttgcttttgatagttggataagcgaaaaaacgcccatc
atagtcgcaaccaatgcctttggtatggggatagacaagcctaatgtaagggtagttatt
catttaaaccttcctagttcgattgaaaattatattcaagaagctggacgtggcggacga
gatggaaataaagctttttctgttgttttagtcaataaaaatgatatcaaaaaaagcgaa
gactctttagaaacctcgcttcctattatttctgatataaaattagtacatcgaaaatta
tatcagcattttcaaattacaataggtgaatttattgaaacagctttcgattttaatttt
ttagagttctgtacaaagtataaactcccttctactaaaacatataatgtattacagata
ttaaatagtaatggtattatagaattaaatgctaattttcagcaaaaatcaaccattcat
tttattgttttaagtaaacaggttgtactttattctcaacaaaatccatcagtaaaaaac
tttatacaaacagttttacgcttatatggaggtgtttttgaaaaccctattaaaattgat
gagttttatatcgccaaaaaaacaggcattacttcatggcaagttgttgaggaattagaa
cgaatgcaagaaaaaaatatactcgaatatcataaagcaaccaataattctgaattgttt
ttactgcatccacgagaagatgataaaactatcaatagagtttcaaaaaacattaacctc
tatttaactcaaaaaaagcaaaaacataaagatttaattcattttatagaaaataatgac
gtttgtagaagtgttcagttactagcttattttaatgaagatgctactaaaaaatgtgga
atttgtgatgtttgcttacaacataaaaaaactttttatataaatccgaagcatataatt
aagatacttgatactaaaaaaggattaagtgtttctgaaatctgtacactactacattga
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