KEGG   Thermococcus pacificus: A3L08_00990
Entry
A3L08_00990       CDS       T05192                                 
Name
(GenBank) tRNA-intron lyase
  KO
K01170  tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
Organism
tpaf  Thermococcus pacificus
Brite
KEGG Orthology (KO) [BR:tpaf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tpaf03016]
    A3L08_00990
Enzymes [BR:tpaf01000]
 4. Lyases
  4.6  Phosphorus-oxygen lyases
   4.6.1  Phosphorus-oxygen lyases (only sub-subclass identified to date)
    4.6.1.16  tRNA-intron lyase
     A3L08_00990
Transfer RNA biogenesis [BR:tpaf03016]
 Prokaryotic type
  tRNA spricing factors
   tRNA splicing endonucleases
    A3L08_00990
SSDB
Motif
Pfam: tRNA_int_endo tRNA_int_endo_N tRNA_int_end_N2 Sen15
Other DBs
NCBI-ProteinID: ASJ06006
UniProt: A0A218P5D4
LinkDB
Position
complement(166535..167050)
AA seq 171 aa
MKEPIVFQLSGDRVFSEREKAINQFYNKRYFGEVVNGKLFLSLIEAAYLMEKGKIRVFDG
DRELSFQDLVELGRKRDDQFDIKLLVYTDLRDRGYTVKSALKFGSHFRVYRRGMDEHSQW
LVWVVPENLRFSPNDITARVRVAHGVRKNMVMAVVDEDNDVVYYKIEWVKF
NT seq 516 nt   +upstreamnt  +downstreamnt
ttgaaggaaccgatagtcttccagctaagtggagacagggtcttcagcgagcgcgagaaa
gctatcaaccagttctacaacaagcgctacttcggcgaggttgtgaacgggaagctcttc
ctctcgcttattgaggcggcctacctgatggagaagggcaagataagggtcttcgatggt
gatagagagctgtccttccaggatttggtagaactcgggcggaagcgcgatgaccagttc
gatataaagctcctcgtctacaccgacctgcgcgacaggggatacaccgtgaaatcggcc
ctcaagttcggctcccattttagggtttacaggcggggaatggacgagcactcgcagtgg
ctcgtctgggtggttcccgagaacctgcgcttttctccgaacgacataactgcgcgggtt
agggtggcccacggcgtcaggaagaacatggtcatggccgtcgtcgatgaggacaacgac
gtggtgtattataagattgagtgggtgaagttttag

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