Thermococcus pacificus: A3L08_03865
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Entry
A3L08_03865 CDS
T05192
Name
(GenBank) RNA-binding protein
KO
K12589
exosome complex component RRP42
Organism
tpaf
Thermococcus pacificus
Pathway
tpaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L08_03865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpaf03019
]
A3L08_03865
Messenger RNA biogenesis [BR:
tpaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L08_03865
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
A3L08_03865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ASJ06525
UniProt:
A0A218P6V9
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All DBs
Position
695332..696141
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AA seq
269 aa
AA seq
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MEVMAGIMRDRILELLKDGRRIDGRGLEDYRDLEVKVNVIEKAEGSAWVRLGDTQVLVGI
KVDMGEPFPDLPDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESQAVELE
KLVIVPGKLVRVVFIDVHVLDHGGNLLDATGIGAIAALLSTKMPKVRYNEETDEVEVLDE
YEPLPVRRLPIPVTFAKIGSNLLVDPSLDEEMVMDGRITITTDENEMISSVQKGEGGSFK
LEEVMYAVDTAIKKAAELREKVLEAVKAG
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcatggcagggatcatgcgcgacaggatcctcgagctcctcaaggacggcagg
agaatagatgggagaggtctagaggattaccgcgacctcgaagttaaggtcaacgtcatc
gagaaggccgaaggttccgcctgggtcaggctcggggacacccaggttctcgtcggcata
aaggttgacatgggcgagcctttccctgacctccctgacaggggtgtcataaccaccaac
gtcgagctcgtcccgcttgcttcaccgagctttgaaccgggcccgccggacgagaacgcc
atcgagctggcgagggtcgtcgacaggggcatcagggagagccaggccgttgagcttgag
aagctcgtcatagtgccgggcaagctcgtccgcgttgtcttcatagacgtccacgttctc
gaccacggcggcaacctcctcgacgcgaccggaataggcgccatagctgccctcctcagc
accaagatgccgaaagtgaggtacaatgaggagaccgacgaggtcgaggttctcgacgag
tacgagcccctccccgtcaggaggcttcccataccagtcacgttcgctaagatcgggtcc
aacctgctcgtggacccaagccttgacgaagagatggtcatggacggcaggataaccatc
accaccgatgagaacgaaatgatatcctccgtccagaagggtgaagggggaagctttaag
ctcgaggaggtcatgtacgccgttgacactgccatcaagaaggcggcggagctcagggag
aaggttcttgaggccgtcaaggccgggtga
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