KEGG   Thermococcus pacificus: A3L08_03865
Entry
A3L08_03865       CDS       T05192                                 
Name
(GenBank) RNA-binding protein
  KO
K12589  exosome complex component RRP42
Organism
tpaf  Thermococcus pacificus
Pathway
tpaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L08_03865
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpaf03019]
    A3L08_03865
Messenger RNA biogenesis [BR:tpaf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L08_03865
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     A3L08_03865
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: ASJ06525
UniProt: A0A218P6V9
LinkDB
Position
695332..696141
AA seq 269 aa
MEVMAGIMRDRILELLKDGRRIDGRGLEDYRDLEVKVNVIEKAEGSAWVRLGDTQVLVGI
KVDMGEPFPDLPDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESQAVELE
KLVIVPGKLVRVVFIDVHVLDHGGNLLDATGIGAIAALLSTKMPKVRYNEETDEVEVLDE
YEPLPVRRLPIPVTFAKIGSNLLVDPSLDEEMVMDGRITITTDENEMISSVQKGEGGSFK
LEEVMYAVDTAIKKAAELREKVLEAVKAG
NT seq 810 nt   +upstreamnt  +downstreamnt
atggaagtcatggcagggatcatgcgcgacaggatcctcgagctcctcaaggacggcagg
agaatagatgggagaggtctagaggattaccgcgacctcgaagttaaggtcaacgtcatc
gagaaggccgaaggttccgcctgggtcaggctcggggacacccaggttctcgtcggcata
aaggttgacatgggcgagcctttccctgacctccctgacaggggtgtcataaccaccaac
gtcgagctcgtcccgcttgcttcaccgagctttgaaccgggcccgccggacgagaacgcc
atcgagctggcgagggtcgtcgacaggggcatcagggagagccaggccgttgagcttgag
aagctcgtcatagtgccgggcaagctcgtccgcgttgtcttcatagacgtccacgttctc
gaccacggcggcaacctcctcgacgcgaccggaataggcgccatagctgccctcctcagc
accaagatgccgaaagtgaggtacaatgaggagaccgacgaggtcgaggttctcgacgag
tacgagcccctccccgtcaggaggcttcccataccagtcacgttcgctaagatcgggtcc
aacctgctcgtggacccaagccttgacgaagagatggtcatggacggcaggataaccatc
accaccgatgagaacgaaatgatatcctccgtccagaagggtgaagggggaagctttaag
ctcgaggaggtcatgtacgccgttgacactgccatcaagaaggcggcggagctcagggag
aaggttcttgaggccgtcaaggccgggtga

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