Thermococcus pacificus: A3L08_04420
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Entry
A3L08_04420 CDS
T05192
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tpaf
Thermococcus pacificus
Pathway
tpaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L08_04420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpaf03019
]
A3L08_04420
Messenger RNA biogenesis [BR:
tpaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3L08_04420
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ASJ06620
UniProt:
A0A218P787
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All DBs
Position
774199..775533
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AA seq
444 aa
AA seq
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MIKIYTLSGYEEVGKNMTAVGYTNGGREEVVIIDMGIRLDRVLIHEDVNIQEFPTKELQK
LGAIPDDSVLRNKKVVAITFTHGHLDHIGAIGKLAPHYPDVPVYGTPYTIKLAKSEVKSE
KYFEVKNPMYETQFGEIVQVSENLAIEFVQITHSIPQAAMVVVHTPEGAVVHTGDFKFDN
NNPLGEKPDYKRLKELGKEGVKVLIPESTRVSEPTKTPSEAVAQMLLEDFFLYEGMEEDG
LIATTFASHIPRLQELIWIANKMGRQAVFVGRSLAKYTGIAKQLGLIRMKGARAVRSPNA
IKKVLAEVSGARENYLLVVTGHQGEPGAVLTRMANGELYDIGKRDTVVFSAGTIPNPLNK
AQRYVLETKLKMKGVRMIKDLHVSGHASREDHRYLLRMLNPENIVPAHGEFRMLTHYAEL
AEEEGYLIGRDVFVSRNGYTVEIR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaatctacactcttagcggctacgaggaagtcggcaagaacatgacggccgtc
ggctataccaacggcggcagggaagaggtagttataatcgacatgggtataaggctcgac
cgcgttctaatccacgaggatgtgaacatccaggagtttccaacgaaggagctccagaag
ctcggagcaatcccggacgactctgttctaaggaacaagaaggtcgtcgccataaccttc
acccacggccacctcgaccacataggggcgataggaaagctcgcaccccactaccctgac
gtgccggtgtacgggacgccgtacaccataaagctcgccaaaagcgaggtcaagagcgag
aagtacttcgaggtcaagaaccccatgtacgagacccagttcggcgagatagtgcaggtc
agcgagaacctcgcgatagagttcgtccagataacccactcgataccgcaggcggccatg
gtggtcgttcacacgcccgaaggcgcagtagttcacaccggcgacttcaagttcgacaac
aacaacccgctcggcgagaagcctgactacaagcgcctcaaggagctcggaaaggagggc
gttaaggtcctcataccggaatccacgcgcgtctcagagccgactaaaaccccaagtgag
gccgttgctcaaatgctcctcgaggacttcttcctctacgagggcatggaggaggatggg
ttaatagcaacgaccttcgccagccacatcccgcgcctccaggagctcatctggatagcc
aacaagatgggcaggcaggcggtttttgtaggccgctcactggcgaagtacacgggaata
gcgaagcagctcggcctcataagaatgaaaggagccagggccgtcaggagccccaacgcg
ataaagaaggttctcgcagaggtttccggcgcgagggagaactacctgctcgtcgtcacc
ggccaccagggtgagcctggagcggttcttaccagaatggccaacggagagctctacgac
ataggcaagcgcgacacggtggtattctccgcggggacgataccgaacccgctcaacaag
gcccagcgctacgtcctcgagacgaagctcaagatgaagggcgtcaggatgataaaggac
ctccacgtgagcggccacgcgagcagggaagaccaccgctacttactgaggatgctcaat
ccggagaacatcgttccggcccacggcgagttcaggatgctaacccactacgcggaattg
gcagaggaggaaggctacctcatagggcgcgatgtttttgtgtcgaggaacggatacacg
gttgagatacgctga
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