KEGG   Thermococcus pacificus: A3L08_05580
Entry
A3L08_05580       CDS       T05192                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
tpaf  Thermococcus pacificus
Pathway
tpaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L08_05580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpaf03019]
    A3L08_05580
Messenger RNA biogenesis [BR:tpaf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L08_05580
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     A3L08_05580
SSDB
Motif
Pfam: ECR1_N EXOSC1 CvfB_2nd S1 Auto_anti-p27 OB_RRP5_4th RRP4_S1 HVO_2753_ZBP Prok-RING_1 DZR OB_MEIOB_N Zn_ribbon_PaaD Trm112p
Other DBs
NCBI-ProteinID: ASJ06826
UniProt: A0A218P7Q9
LinkDB
Position
999150..999740
AA seq 196 aa
MDGKKGVKTGDLVLPGDYLGVIEEYFPGDGVKEENGELYAVRAGKVVIDPDRMEISVEPV
TDTPPLPKVGDVVIARVIEVKPQAAIVQIVKIEGRNNDREIATSKLAGIHISQARNGYVD
NLANEFRIGDIVRARVIATEKSPIQLSTKDPDLGVIYALCTRCRTPLVRRGDKLICPRCG
HVETRKLSSLYRKVKV
NT seq 591 nt   +upstreamnt  +downstreamnt
atggatggaaagaaaggcgtaaagaccggcgatctcgttcttcccggtgactacctcggt
gtcatcgaggagtacttcccgggtgatggagtcaaggaggagaacggtgagctctatgct
gttagggcaggaaaggttgtaatcgacccggacaggatggaaataagcgtcgagcctgta
accgacacaccgcccctcccaaaggtcggcgatgtggtcatagcaagggtcattgaggtc
aagccccaggcggcgatagttcagatagttaaaatcgagggcagaaacaacgatagggag
atagcgacttcaaagctcgcaggcatacacatctcccaggccaggaacggctacgttgac
aacctagccaacgagttcaggattggtgacatcgtcagggccagggtaatagccaccgag
aagagcccgatacagctctccacgaaggaccccgacctcggtgtcatctacgccctctgc
acgaggtgcagaacgccgctggttaggcgtggggataagctcatctgtccgcgctgcggc
cacgtcgagacgaggaagctctcctctctctacaggaaggtgaaggtctga

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