Thermococcus pacificus: A3L08_05580
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Entry
A3L08_05580 CDS
T05192
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
tpaf
Thermococcus pacificus
Pathway
tpaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L08_05580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpaf03019
]
A3L08_05580
Messenger RNA biogenesis [BR:
tpaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L08_05580
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
A3L08_05580
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
CvfB_2nd
S1
Auto_anti-p27
OB_RRP5_4th
RRP4_S1
HVO_2753_ZBP
Prok-RING_1
DZR
OB_MEIOB_N
Zn_ribbon_PaaD
Trm112p
Motif
Other DBs
NCBI-ProteinID:
ASJ06826
UniProt:
A0A218P7Q9
LinkDB
All DBs
Position
999150..999740
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AA seq
196 aa
AA seq
DB search
MDGKKGVKTGDLVLPGDYLGVIEEYFPGDGVKEENGELYAVRAGKVVIDPDRMEISVEPV
TDTPPLPKVGDVVIARVIEVKPQAAIVQIVKIEGRNNDREIATSKLAGIHISQARNGYVD
NLANEFRIGDIVRARVIATEKSPIQLSTKDPDLGVIYALCTRCRTPLVRRGDKLICPRCG
HVETRKLSSLYRKVKV
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggatggaaagaaaggcgtaaagaccggcgatctcgttcttcccggtgactacctcggt
gtcatcgaggagtacttcccgggtgatggagtcaaggaggagaacggtgagctctatgct
gttagggcaggaaaggttgtaatcgacccggacaggatggaaataagcgtcgagcctgta
accgacacaccgcccctcccaaaggtcggcgatgtggtcatagcaagggtcattgaggtc
aagccccaggcggcgatagttcagatagttaaaatcgagggcagaaacaacgatagggag
atagcgacttcaaagctcgcaggcatacacatctcccaggccaggaacggctacgttgac
aacctagccaacgagttcaggattggtgacatcgtcagggccagggtaatagccaccgag
aagagcccgatacagctctccacgaaggaccccgacctcggtgtcatctacgccctctgc
acgaggtgcagaacgccgctggttaggcgtggggataagctcatctgtccgcgctgcggc
cacgtcgagacgaggaagctctcctctctctacaggaaggtgaaggtctga
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