Thermococcus pacificus: A3L08_08955
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Entry
A3L08_08955 CDS
T05192
Name
(GenBank) RNA helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
tpaf
Thermococcus pacificus
Brite
KEGG Orthology (KO) [BR:
tpaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpaf03019
]
A3L08_08955
Messenger RNA biogenesis [BR:
tpaf03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
A3L08_08955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
ATPase
Motif
Other DBs
NCBI-ProteinID:
ASJ07437
UniProt:
A0A218P9G9
LinkDB
All DBs
Position
complement(1634622..1637240)
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AA seq
872 aa
AA seq
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MLFVVRPGRKKNELEAFFIENEPEKLAQMRNLKADAIYRFIMREGRLFKVLEGSQYRNPK
EMEKLLRQARIVLVNADEWEDYFKRRLQNKRVERAELCRLCLMEGRITVLTEGNRVKYHN
EYICERCAEDELKRELRFRFKSVAMFDQAKKLLERFRDLDKVLYAFDPRFDPTRHPEVTK
WDELKAKHVKVDKVKVDELPVPEKFKSVLKAEGVNELLPVQSLAVKNGLLEGENLLVVSA
TASGKTLIGELAGVPKAMKGQKMLFLVPLVALANQKYEDFKRRYSKLGLRVAIRVGMSRI
KTKDELVVVDTGIDADIIVGTYEGIDYLLRAGRKIGNVGTIVIDEIHTLDDEERGSRLDG
LIARLRKLYPKAQFIGLSATVGNPEELAKELGLKLVLYDERPVDLERHIIIARNEGEKWR
HIANLCKAEANRKSKQGYKGQTIVFTFSRKRTHELAAYLTSKGLRAKPYHSGLPYKQRKL
TEMEFLAQMLDVVVTTAALGAGVDFPASQVIFESLAMGNKWLSVREFHQMLGRAGRPLYH
EKGRVYLIVEPGRKYSAQMEGSEDEVAFKLLTAPIEPVVVEWSDELEQDNVLAHSCVFNR
LDVIEEVQSRCLGANQSAEKVLEKLEEFDFVRLNGSLVEVTHYGRAVSMSFLLPKEATFI
RENLGEKPAQWIAVKLLPFENLYLSSVLQRELESAVRGRLSANVFSPSFASILDELDKVI
PELSPNAAERLFTLYQEFFMCPEDDCTDYAMERVSNMIIELRRSGKHPTQIAEHFRKVYG
LIVYPGDVFTWLDGIVRKLEAIERIARVFRVRDAEEEAKILKREIEEGRTIRREGGERRN
HPGHQDLRNQRGQSLQNWKGKGRKNWEKRRDV
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgctcttcgttgtgagacctggcaggaaaaagaacgagcttgaggcctttttcatcgag
aacgagcccgagaagctggctcaaatgaggaatctaaaagctgatgcgatttaccgcttc
ataatgcgcgagggaaggctcttcaaggtccttgaggggagccagtacaggaacccaaag
gagatggagaaactattaagacaggccagaatagtcctcgtgaacgccgacgagtgggag
gactactttaagagacgccttcagaacaagcgcgttgagagggccgaactctgtcgcctc
tgcctcatggagggaaggataaccgttctcaccgaggggaaccgcgttaagtatcacaac
gagtacatctgcgagcgctgcgccgaggacgagcttaagagggagcttcgcttccgcttc
aagagcgtggcaatgttcgatcaggcgaagaagctccttgagcgcttccgcgatctggac
aaggtcctctacgccttcgacccgcgctttgacccgacgaggcatcctgaagtaaccaag
tgggacgagctgaaggcgaagcacgtgaaggtggataaagtcaaagtcgatgagcttccc
gttccagagaagttcaaatccgtcctaaaggcagagggcgtaaacgaactcctcccggtt
cagagcttggccgttaagaacggcctccttgaaggcgagaacctcctcgttgtttcggca
acggcgagcggaaagacgctgataggcgagcttgctggagttccaaaggctatgaaaggc
cagaagatgctcttcctcgttccgctcgttgcccttgcaaaccagaagtacgaggacttc
aagaggaggtattccaaactcggcctccgtgttgccatccgcgttggaatgagcaggatt
aagaccaaagacgagctcgttgttgtcgacacgggcatagacgccgacatcatagtggga
acctacgaagggattgactatctcctcagggctggaagaaaaattggcaacgtcgggact
atagtcatagacgagatccacacgttggacgatgaggagaggggatcccgtttagacggc
ctcatcgcaaggctgagaaagctctatcccaaggcccagttcataggtttaagcgcaacc
gttgggaatccggaggaactggccaaggaactcgggttaaaactggtcctctacgacgag
aggcccgttgaccttgagaggcacatcatcatagcgagaaacgagggcgagaagtggcgg
catatagcgaacctctgtaaagctgaggcaaacaggaagtctaaacagggttataaaggg
cagacgatagtcttcaccttctcaaggaagaggacgcatgagcttgccgcttacctcacg
agcaagggactgagggcgaagccctatcactccggcctgccttacaagcagagaaagctc
accgagatggagtttctggctcagatgctcgacgttgttgttaccaccgcggccctcggg
gctggagtggactttccggcttcccaggtgatctttgagagcctcgcgatgggcaacaag
tggctaagcgtgagggagttccaccagatgctcggccgtgctgggaggccgctctaccac
gagaaggggagggtctacctcatagtcgagccagggagaaagtactcggcccagatggaa
ggcagtgaagatgaagttgccttcaagctcttgactgcaccgatagagcctgtcgtagtc
gaatggagcgacgagctcgagcaggacaacgttctggcccactcgtgcgtcttcaacagg
ctcgacgtcattgaagaagtccagtcaaggtgcctcggggcgaaccagagcgcggagaag
gtcctggagaagctggaggagttcgacttcgtccggcttaatggttctctcgttgaggtc
acccactacggaagggccgtgagcatgagctttttgctgccgaaggaagccacattcatc
cgcgagaaccttggcgagaaaccggcccagtggatagcggtaaaactgctccccttcgag
aacctctacctgagcagcgtcctccagagggagcttgagagcgcagttaggggccgcctc
agcgccaacgtcttctccccgagcttcgcctccatcctggacgagctcgacaaggtgatt
ccggagctgagtccaaacgccgccgagagactcttcacgctctaccaggagttcttcatg
tgcccagaggatgactgcaccgactacgcgatggagcgggtaagcaacatgataatcgag
ctgaggaggagcgggaaacatcccactcaaatagccgagcacttcaggaaggtctacggg
ctgatagtctatcccggcgacgtcttcacgtggctcgatggtatagtaaggaagcttgag
gcaatagagagaatagcgagggtcttccgcgttagggatgctgaggaagaggcgaagatc
ctgaagagggagattgaggagggcaggacgatacgaagggaaggtggagaaagaaggaac
catccgggacatcaggatctgaggaatcagaggggtcagagtctgcagaactggaaagga
aaggggcgaaaaaactgggaaaagcgaagggacgtgtga
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