Tympanuchus pallidicinctus (lesser prairie-chicken): 128072407
Help
Entry
128072407 CDS
T08967
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpai03000
]
128072407 (RC3H1)
04121 Ubiquitin system [BR:
tpai04121
]
128072407 (RC3H1)
Transcription factors [BR:
tpai03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
128072407 (RC3H1)
Ubiquitin system [BR:
tpai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128072407 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
128072407
NCBI-ProteinID:
XP_052522120
LinkDB
All DBs
Position
Unknown
AA seq
1129 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITICSGAEDTKHYEESKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSDE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSSYESALKPGKMDHLSSSAPGSPPNLL
ESVPKSSISALPVNPHPVPARAPTDLPSVSVTKQLQMVPRGSQLYNTQQADIFYQDHRGT
APPFEPAPYQQGVYYPQTMSRFVRPPPSAPEPGPPYLDHYSPYLQDRVVSPQYTQPQQYP
PMGQPIYPPHYDSRRVYPPVQPYQREEMGTGLPRPIEIPQAAVPSYVPESRDRYPQAEGY
CPMAPHLSQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSEE
IFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANVD
SKAMRDQRLDMQRRAAEAGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPIQAMAVQGA
STKSIISDYSPYGTHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAEREQ
QLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQL
SLELHQVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLEPQSKVPAEDLTLAFSS
DVPNGSALTQENISLLSNKAASLSLSEDPEGGGDSQDSQRMGVTPTSAP
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtccaagctccacagtggacggattttctctcctgtccaatttgcacacagact
tttgacgaaacaattcggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcgtgcccttttgaccagaccactatcaacacagat
attgaacttcttcctgtgaactcagccttgctgcagctcgtgggtgctcaggttcctgaa
cagcagccaattactatatgtagtggagctgaagataccaagcattacgaggagagcaaa
aaatgtgtggaagaattagcattgtacctcaaaccactcagcagcgcaagaggtgtgggt
ctgaacagtactactcagagtgtcctgagtcgtcctatgcaaaggaaacttgtgacactg
gttcactgccagctagtggaggaagaaggacggatcagagccatgcgtgcagcacggtca
cttggtgaaagaacagtcacagagctcattcttcagcatcaaaatcctcagcagctctct
tccaacctctgggctgcagtgagagccagaggatgccagttccttggaccggctatgcaa
gaagaggctttgaagctggttctgctggctctggaagatggatctgccttgtcacgaaag
gtcttggttctctttgtggttcagaggctggagccgcgatttcctcaggcttctaaaact
agcattgggcatgttgtccagcttctttacagagcctcatgcttcaaggtgacaaagcgc
gatgaagattcctccctgatgcaactgaaggaggaatttcgtacttacgaagctctgaga
agggaacatgattcccaaattgttcaaattgccatggaagcaggcttacgcattgcgcca
gatcagtggtcctcactgttgtatggagaccagtctcacaaatcccacatgcagtctatc
attgacaagttgcagaccccagcctcatttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcaccttgagctcttg
gcaaatattgatcccagcccagatgctccacctccaacatgggaacaactggaaaatggg
ctggttgctgtaaggactgtggttcacggcttagttgattatatccagaatcacagcaag
aaaggaactgatcagcaacagcctcctcagcacagcaaatacaagacgtacatgtgccga
gacatgaagcagagaggaggatgcccccgaggggccagctgcacctttgcacattcacag
gaggagctagagaaatttcgtaaaatgaacaaacgtctggttccaagaagacctttgagt
gcctccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcggatgaa
gggggagtggacttgcccaataggaaaacctctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacgcaacttatttctcgagggactgactccagttatgaaagtgctctg
aagccagggaagatggaccatctgagtagcagtgcccccggatcccctcctaacttgctg
gaatctgtccccaagagctctatttctgccttaccagtgaaccctcatcctgtgcctgct
cgggcaccaacagatctgccttcagtgtctgtcacaaaacagttgcaaatggtacctcgt
ggatctcagctgtataatactcagcaggcagatatcttttatcaagatcataggggaact
gccccaccatttgagccagcaccctaccaacaaggagtttactatcctcaaaccatgtct
cgctttgtgcggcctcctccatcagctccagaacccggtccgccttatttagaccattac
tcaccctaccttcaggatcgtgtggtgagcccccagtacacacagccgcagcaatatcct
cccatgggacagcccatatatccaccacactacgacagccgccgcgtgtatccccctgtg
cagccctatcagcgagaggagatggggacagggcttcctcggcccattgaaattccacaa
gcagctgtaccctcctacgtacctgaatccagggacagatacccacaagcggagggttat
tgcccaatggctccgcatctcagtcagatcagaccttcctgccaccggcctcatcccagc
ctggatgaactgcaccgacgaaggaaagagatcatggcacagttagaggagaggaaggtt
atttccccacctccttttgcaccttctccaaccttgcctcatccttttcattcagaagag
atctttgtttttgtacagtacttagacgaagacctgaaggtagctgggaaatacaaagga
aatgactacagccagtactctccctggtcctgtgacaccatcggctcctacattggaacc
aaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaacgtggat
agtaaagccatgcgtgaccaacgattagacatgcagagaagagcagcagaggctggtgat
gatgacctcattccatttggagaccgaccgactgtgtcgagatttggggctatctctcgt
acttccaaagcaatgtaccagaattctggtcccattcaggccatggcggttcagggagct
tccaccaaatcaatcatttcagactacagtccttacggaactcatggtggctggggaggc
tctccatattctccccatcagaatataccttctcagggacgtttcaatgacagggagaga
ctgtccatgtcagatgtggctggtcatggaaaacagttgccctcagctgagcgggagcag
caactgcgcatggagctgcagcaagtggaccatcagattagccagcagacacaaatgaga
ggactggaggctgttagtaacaggctgctgttgcagagggaggcgactactctggcaggc
caaccacagcccccacccccacctcccaagtggcctgggatgatctcaagtgaacagctg
agcttggagctacaccaggtggaaagggaaattgggaagagaacccgggagctgagcatg
gaaagccagtcttcactggatataaaaaacaaactgggcaccactaaacagacagaaaat
ggacaattagaaccacaaagcaaggttccagctgaggacctcacactggcattcagcagc
gatgttccaaatggatcagccttgacacaagaaaacatcagcctcctgtcaaacaaggca
gcctctctcagcctgtcagaggacccggagggaggaggagacagccaagactcccagaga
atgggtgttacacccacatctgctccatga
DBGET
integrated database retrieval system
