Tympanuchus pallidicinctus (lesser prairie-chicken): 128072515
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Entry
128072515 CDS
T08967
Symbol
ATG4C
Name
(RefSeq) cysteine protease ATG4C isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04136
Autophagy - other
tpai04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128072515 (ATG4C)
04136 Autophagy - other
128072515 (ATG4C)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tpai01002
]
128072515 (ATG4C)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128072515 (ATG4C)
03029 Mitochondrial biogenesis [BR:
tpai03029
]
128072515 (ATG4C)
Peptidases and inhibitors [BR:
tpai01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
128072515 (ATG4C)
Membrane trafficking [BR:
tpai04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
128072515 (ATG4C)
Mitochondrial biogenesis [BR:
tpai03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
128072515 (ATG4C)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
128072515
NCBI-ProteinID:
XP_052522320
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MEATGTDEVEKIKSKFMSAWNNMKYSWVLKTKTYFSRNSPVFLLGKCYHFKSDESGELST
EGSNFDKINTEISGNVEEFRKDFISRIWLTYREEFPQIKGSALTTDCGWGCTLRTGQMLL
AQGLMLHFLGRAWVWPDALDIENSDSESWTAHTVKKLTASLEASLTAEREPKILSNHQER
IRRNCGDGEMRNEVYHRKIISWFGDSPLAAFGLHQLIEYGKKSGKIAGDWYGPALVAHIL
SFVFVLRKAVEEARDPELQGVTVYVAQDCTVYSSDVIDRQCSFMDSGETDTKAVIILVPV
RLGGERTNMDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDV
SIKDFPLESFHCPSPKKMSFKKMDPSCTIGFYCRTVQDFEKASEEITKMLKSSSKEKYPL
FTFVKGHSRDYDFASSPLHEENDLFSEDEKKRLKRFSTEEFVLL
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggaggccacagggacagatgaagtggaaaagatcaaatcaaagtttatgtcagcatgg
aacaacatgaaatacagttgggtattgaaaacaaaaacttacttcagtagaaactctcca
gtctttctgctgggaaaatgttaccacttcaaatctgatgaatctggtgaactctctaca
gagggatccaactttgataaaatcaacacagagatttcaggaaacgttgaggagtttcgt
aaagatttcatctctaggatatggctgacctaccgagaggaatttcctcagataaagggg
tctgcactcacaacagactgtggctggggctgcacgctcagaactggtcagatgttgctg
gctcaaggtcttatgcttcattttcttggtagagcctgggtctggccagatgccttggac
attgaaaattcagattctgaatcctggacagcccacacagttaagaagctgacagcatcg
ttggaagcatcgcttacagcagaaagagagcccaagatcctgtcaaaccatcaggagaga
ataaggagaaactgtggcgatggtgaaatgagaaatgaagtttatcacagaaaaataatt
tcttggtttggcgactctccgttggcagcttttggcttacatcagctaatagaatatgga
aagaagtctgggaaaattgctggagattggtacgggcctgcacttgttgcacacatttta
agttttgtgtttgtacttagaaaagctgttgaagaagcaagagaccctgagctgcaggga
gtaacagtctatgttgctcaggattgtacagtctacagttcagatgttattgacagacag
tgttcttttatggattctggagaaacagacacaaaagctgtaattatattagttccagtg
agactcggtggagaaagaacaaacatggactacttagagtttgtaaagggtattttaagc
cttgagtattgtgttggtattattggtggcaaacccaagcagtcgtattactttgctgga
tttcaagatgacagtttgatttacatggatcctcattactgccaatcttttgtagatgtc
agcataaaggatttccctcttgagtcattccactgtccttctcccaaaaagatgtcattc
aaaaaaatggatccgagctgtacaataggattttactgtagaactgtgcaggactttgag
aaggcttctgaggaaataacaaagatgctgaaatcttcatccaaggaaaaataccccttg
tttacttttgtgaagggtcattccagagactatgactttgcttccagtccactccatgaa
gaaaatgaccttttctctgaggatgaaaagaaaagattaaagagatttagtactgaggag
tttgtcttgctgtaa
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