Tympanuchus pallidicinctus (lesser prairie-chicken): 128072535
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Entry
128072535 CDS
T08967
Symbol
ABCA4
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4 isoform X1
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128072535 (ABCA4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tpai02000
]
128072535 (ABCA4)
Transporters [BR:
tpai02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
128072535 (ABCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
128072535
NCBI-ProteinID:
XP_052522359
LinkDB
All DBs
Position
Unknown
AA seq
2331 aa
AA seq
DB search
MSFLRQIRLLLWKNWILRKRQKLRILVELIWPLSLFLALVWLRKANPLYRQHECHFPNKA
MPSAGTLPWLQGIFCNMNNPCFRSPTRGESPGVVSNYNNSILARVYKDAQELLLEAPEIH
DLGRVWEELIIMTQFMETMRTNPERIAGRGIRILDILKDGEILTSFLLENLGLPDAVVFQ
LVNAQVRPEQFVYGVPNLTLKDIACSQMLLNRFIIFSSRRGLPSVHKAMCALSQESLQRV
EDALYANVDFFKLFQLLPTVLDRNSAGADLRSWGRVLSNVSQAVQKLARKQSVQDLLMVL
QPFVQDGIPESLGHLVSSLSDLFCGYPEGGGSRVLSFNWYEDNNYKAFLGIDSTKKSIYL
YDNTTTPFCNELIQNLESNPLTKIAWSAVKPLLMGKILFAPNSPPVQQIIKNANSTFEEL
ERLRLLIKAWEEVGPQLWYFFQNSLQMNMIRDSLKHSTVRDFLNSQLGAEGLTAEYIINF
LHNGPPGSREKGMVDFDWRNIFSAADQALRLISQYLECLTLDKFEGYHDETQLTHQALHL
LEENKFWAGVVFPDIDPTRKTLPLHVKYKIRMDIDVVEKTNKIKDRYWDPGPRADPVDDL
RYIWGGFAYLQDMIEHGIIKTQTNAEVPQGIYLQQMPYPCFVDDVFMITLNRSFPIFMVL
AWIYSVSMTVKSIVLEKEKRLKEAMKNRGITNGVIWCTWFLDSFFMMAVSTFLLTALIMH
GQVLNYSNPLLFFLFLLTFNTATIMQCFLLSTFFSKANLAAACSGVLYFTLYLPHIVCFV
WQDRMTVNLKILASLLSQVAFGFGTEYLSRYEEQGLGLQWGNIRTSPLEGDEYSFLFSIK
MMLFDAFLYGILSWYLDHVFPGDYGLPQPWYFPLQESYWLGSRNPKAEKTATADEKASES
EGCVDQKAVDGERNESRTKKCEEPEKPEEKNGNQGKKDGKNKQCKHKREKELGEQGKPKT
DVQDKDEININTFCEPEPTGLIPGVCIQNLVKIFANKPKPAVDRMNITFYEGQITAFLGH
NGAGKTTTMSIVTGLFPPTSGTVLIGGLDIQTHMDSIRQKLGMCPQHNILFNHLTVAEHI
LFYSQLKGRSRDEAEQELETMLEDMGLTHKRNEEAQNLSGGMQRKLSVAIAFVGEAKVVV
LDEPTSGVDPYSRRSIWDLLLKYRSGRTIILSTHHMDEADILGDRVAIISQGKLFCSGSP
VFLKNCFGSGFYLTLVRKAKNTRTGRNVSLCSCGSQCSCSCSGCAHNNEEGTQEQELGGD
LNELEEVIHHHVPEAKLIENIGQELVYLLPNKHFKQRSYASLFRELEETLDDLGLSSFGV
SDTPLEEVFLKVTAEADPEVQKAGDTPENDSTPGKISTENKTAEQTPVETNDTSQMPGIA
GDQNEGKGSLQYKGFQLVHQQFKALFIKRFHHASRSYKDFLTQIVLPATFVLLSLVLTVI
IPPFGEYPALTLDPWIYGQQFTFFSNERPGSEQMVSLTNAFLNKPGFGNRCLKNQSFLNY
PCNNMPTAWNIPAVHPNLSSLLLSQKWSSENPSPSCKCSTHKKLTMLPECPPGAGGLPPP
QRVQHSTEILQDLTHRNISDFLVKTYPILIKGSLKSKYWVNEQRYGGISIGGKLPILHVS
GDEVVNFLSNLGRMMNVTGGQTSLAAAKEFSNFLKYMETEDNIKVWFNNKGWHAMVSFLN
VANNAVLRANLRTGQAPEEYGITVVNHPLNLTKEQLSEVTVLTTSVDAVVAICVIFAMSF
IPASFVLYLIQERVTKAKHLQFVSGVSPAIYWLTNFMWDIVNYAVSAGLVVVIFIGFKKK
AYTSRTNLPVFVALLLLYGWAVIPMMYPASSFFSVPSTAYVALSCINLFVGINSSAITFI
LELFENNPTLLKFNKTLKNVLIVFPHFCLGRGLIDLAINQAVSEVYARFGEEHVSNPFQW
DFVGKNLVAMAVQGIAFFFLNLLMQHQLFPSRWFVEIDKSPIVGEDEDVAEERKRILNGG
NKTNILELQELTKIYAGKHKPAVDRLCVGIRPGECFGLLGVNGAGKTTTFKMLTGDTEVT
SGDAVVAGNSVLTHISNVHQNMGYCPQFDALDDLLTGREHLYLYARLRGVPAEEIKRVAE
WGIQKLGLPMYADQLAGTYSGGNKRKLSTAIALIGCPPLILLDEPTTGMDPQSRRLLWDS
IVSVLRDGRAVVLTSHSMEECEALCTRLAIMVKGTFKCLGTIQQLKYKFGDGYIVTLKIK
APKTGLPPDLSRAEQFIRINFPGSLQREKHYNMLQYQICSSSLAKIFRLIISNKENLYIE
EYSVSQTTLDQVFVNFAKQQVEDEEIPLHPRAAGSNQETKVSPASQQQAVA
NT seq
6996 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcctaaggcaaatcagacttctactctggaagaactggatcctccgaaaaagg
caaaagcttcgcattctggtggagcttatatggcctctgtcattatttcttgccctggtc
tggctgaggaaagctaatccactctatcgccaacatgaatgtcacttcccaaacaaggcg
atgccatccgcaggaacgctgccatggttacaaggcatcttctgtaacatgaacaatcct
tgtttccgcagcccaacccgtggagagagtccaggtgttgtgtccaactacaacaattcc
attcttgcaagagtatataaagatgctcaggagctcttactggaagcccctgaaatccac
gaccttggcagagtctgggaagaactgatcattatgactcagtttatggaaacaatgaga
acaaatcctgaaagaattgcaggaagaggaataagaattctagacattttgaaagatggg
gagattctcacttccttcttactggaaaaccttggccttcctgatgcagttgttttccag
cttgttaatgctcaagtgcgccctgaacagtttgtgtatggtgtaccgaacttgacgcta
aaggacattgcttgtagtcagatgctcttgaaccgctttattatcttcagcagccgaagg
ggcctcccttctgttcataaggccatgtgtgctctctcccaggaaagcctacagagagta
gaggatgccttgtatgcaaatgttgatttctttaagctatttcagctgcttcccactgtg
ttggacagaaattcggcaggtgctgacctcaggtcctgggggagggtgctatctaatgtt
tcccaagcagtacaaaagctagccaggaagcaaagtgttcaggaccttttaatggttttg
caaccatttgtacaagatggaataccagaatccttaggccacttggtgagctccctttct
gatcttttctgtggctacccagaaggaggtggatccagagtgctttctttcaactggtat
gaagataacaactacaaagctttcctggggattgattccacaaagaaatccatttatctt
tatgataatacaaccacacccttttgcaatgaattgattcagaacttggaatcaaaccct
ttaaccaaaatagcctggagtgctgtgaagcccctgctgatgggaaaaatcctctttgct
cccaattcacctcctgtacaacaaatcattaaaaatgcgaactccacttttgaggaactc
gaacgcctcagactgttgatcaaagcttgggaagaagtaggacctcagctgtggtacttc
ttccaaaacagcctgcaaatgaatatgatccgtgactctctgaagcactctacagtgagg
gacttcctgaacagtcagctgggtgctgaaggcttaactgctgaatatattatcaacttt
ctccacaatgggcctccagggagtagggaaaagggaatggtggattttgactggaggaac
atattcagtgctgcagaccaagctctgcgtttgatcagtcagtatctggagtgcttgact
ctggataaatttgaaggttatcatgacgaaacccagctaactcatcaagcccttcattta
ctagaggaaaacaaattctgggctggtgtggtttttccagatatagaccctacaagaaaa
actcttccactgcatgtgaaatacaagattcgaatggacatagatgttgtggagaaaaca
aataaaatcaaagataggtattgggatcctggtccaagagctgatcctgtggatgattta
cgttatatctggggaggctttgcatatctccaagatatgattgagcatgggattataaag
acccagaccaacgctgaagtgccacaaggaatttatcttcagcaaatgccatatccatgt
tttgtggatgatgtctttatgataaccttaaaccgctcctttcccatcttcatggtgcta
gcttggatatattccgtttctatgactgtgaagagtatagtgctggagaaggaaaagcgt
ctaaaggaggctatgaagaacagaggcatcactaatggagtgatttggtgcacttggttc
ctagacagcttcttcatgatggctgtgagcacattcctcctcacagcactgattatgcat
ggccaagtcctgaattatagcaatccgcttctcttcttcctatttctactgacattcaat
acagccaccataatgcaatgtttcttgttgagcacatttttctccaaagcaaatctggca
gctgcctgcagtggtgtcctgtatttcaccttatacctgcctcacattgtctgctttgtc
tggcaagatcgcatgactgttaatctgaagatcctagcaagtttgctttctcaagtagct
tttggttttggtacagaatacttgtcacgctacgaagagcaaggtcttggcctacagtgg
ggtaacatcagaaccagtcccttggaaggagatgaatatagttttttattttccattaaa
atgatgctttttgatgcttttctctatggaatactttcttggtaccttgatcacgttttt
ccaggggactatggcctaccacagccttggtatttccctttgcaggagtcttactggctt
ggttctagaaacccaaaagctgaaaaaacagcaacagctgatgaaaaagcttcagagtca
gaaggttgtgtggatcaaaaggccgtggatggggaaagaaatgaaagcagaacaaagaaa
tgtgaagaacctgaaaagccagaagaaaagaatggcaaccaggggaagaaggatggtaaa
aacaaacaatgtaaacacaaacgagaaaaagaactcggcgaacaggggaagcctaagaca
gatgtccaggacaaagatgaaattaatataaataccttctgtgaacctgaaccaacagga
ttgattccaggagtatgcattcagaacctggtgaagatttttgcaaacaagcctaagcca
gcagtagataggatgaatattactttttatgaaggccagatcacagcctttcttggtcac
aatggagcaggaaagacaaccaccatgtcgatagtgacaggcctcttcccacctacttct
ggaactgtgctgattggtggcctggatattcaaactcacatggattccattcgacaaaaa
ctaggcatgtgccctcagcacaacatcctgtttaatcaccttactgtagcagagcacatc
ttgttttactcccaactgaaaggaagatccagggatgaagctgagcaagaattggaaacg
atgctagaagacatgggcctcactcataaaaggaatgaagaggctcagaatctgtcaggt
ggaatgcaaaggaaactgtctgttgccattgcttttgttggtgaagcaaaagtggtggtc
ttggatgagcccacttctggagttgatccatattctaggcgatctatctgggatcttctg
ctgaagtaccgttcaggcagaaccatcatcctctcaacccatcacatggatgaggcagac
atccttggagacagggtagccatcatatcccaagggaaactgttctgctcaggctctcct
gtattcctcaagaactgctttggatctggcttctacctcacccttgttcgcaaggcgaag
aacaccagaactggaaggaatgtatcactttgtagctgtggatctcagtgctcctgctcc
tgttccggctgcgcacacaacaatgaagaaggaactcaagaacaggagctaggtggagat
ttgaatgaactagaagaagtaattcatcatcatgtcccagaagcaaaattaattgaaaat
attggtcaggaacttgtttaccttttgcccaataaacactttaagcagcgatcttatgcc
agtctcttcagagaactggaggaaacactggatgacctgggacttagcagttttggagtt
tcagatacaccacttgaagaggtttttctaaaggtcacagcagaagctgaccctgaagtg
caaaaagcaggagacactccagaaaatgattcaactcctggcaaaatttctactgagaac
aaaacagctgaacagactccagtggaaaccaatgacacttctcaaatgccaggcatagca
ggagatcaaaatgaaggcaaagggtccctgcagtataaaggttttcaacttgtgcatcag
cagttcaaagcactgttcatcaaacgtttccaccatgcctcccgcagctacaaggacttc
ctaacacagattgtcctgcctgctacttttgtgttgctgtctttagtgcttacagtcatt
attcctccatttggagaatatcctgccttaaccttagacccttggatctatggacaacag
tttactttcttcagcaatgagcgtcctggcagtgagcagatggtctccctcactaatgct
ttcttaaataaacctggatttggaaatcgctgcttgaagaatcagtcttttttgaactac
ccatgcaacaatatgcctactgcctggaatatacctgctgttcatcctaacctcagcagc
ctcctgctgagtcagaagtggagctctgagaatccttcgccttcctgcaagtgcagcact
cacaagaaactcactatgctgccagaatgccctccaggagctggaggcctcccaccacct
cagagagtgcagcacagcacagaaatacttcaagatctgactcacagaaatatctcggat
tttctggtgaaaacatatcccattttgataaaagggagcttgaagagcaaatactgggtc
aatgagcaaaggtatggaggaatttctataggaggaaagcttcccatccttcatgtttct
ggagatgaagttgtcaattttttaagtaatctgggccgaatgatgaatgtcacaggaggt
caaacttcactggctgctgctaaagagttctctaatttccttaaatacatggaaactgaa
gataatattaaggtgtggtttaacaataaaggctggcatgctatggttagtttccttaac
gtagccaataacgcagtccttagagctaatctgcggactggccaagcccctgaggaatat
gggatcactgttgtaaaccatcctctgaacctcactaaggaacagctctctgaagtcact
gtgctgaccacctcagtggatgctgttgttgccatctgtgtcatttttgccatgtccttt
attccagctagttttgttttatacctgattcaagaacgtgtgacaaaagccaagcatctc
cagtttgttagtggtgtcagccctgctatctactggctaacgaacttcatgtgggacata
gtgaattatgcagtgagtgctggattggttgtggttatattcattggattcaagaagaaa
gcatacacttctcggactaacctccctgtgtttgttgccttgctgcttctgtatgggtgg
gcagtaattcccatgatgtaccctgcttcttctttcttcagtgtccctagcactgcatat
gttgcattgtcttgcattaatctctttgtggggatcaacagcagtgctattacatttatt
ctggagttatttgaaaataacccgactttgctgaaatttaacaaaactttgaaaaatgtg
ctaattgtcttcccacacttttgcctgggccgtggcctcatcgacttggccataaaccag
gctgtgagtgaagtatatgccaggtttggtgaggagcatgtttccaatccttttcagtgg
gactttgttgggaagaacctggttgccatggctgttcaaggaattgcattcttctttctg
aatctccttatgcagcaccaattattcccctcaagatggtttgttgagattgacaagtcg
cccattgttggtgaagatgaggatgttgcagaagaaagaaaaagaattctgaatgggggg
aacaaaacaaatatcttagaattacaggaattgaccaagatttatgcaggtaagcataag
ccagcagtggacagactctgtgttggcatccgtcctggagagtgctttggtcttttggga
gtgaatggtgctggcaaaacaacaacattcaaaatgctgacaggagacactgaagtgaca
tctggagatgctgttgttgccggcaatagtgtattgactcatatctctaatgttcatcaa
aacatgggatactgccctcagtttgatgcccttgatgacctgctcacaggacgagaacat
ctctatttatatgctcgcttgcggggtgttccagcagaggaaatcaagagggttgctgaa
tggggcatccagaagctgggacttcctatgtatgctgaccagctggctggtacctacagt
ggtggcaacaagcgcaagctctccactgccattgcactgataggctgccctccactcatc
ttgcttgatgaaccaactactggaatggaccctcagtctcggcgccttctgtgggattct
attgtcagcgtgctcagagatggacgagctgtagttctaacttcacacagtatggaagaa
tgtgaagctctctgtactcgtctggccatcatggtaaaaggtaccttcaaatgtctgggc
acaattcagcagctaaaatacaagtttggagatggctacattgtcacactgaaaatcaag
gctcctaagactgggctgcctccagatctaagtcgtgctgaacagttcatacgcataaac
tttccagggagtttacagagagagaaacactacaacatgctgcagtatcaaatttgctcc
tcttctctggctaagatttttcggttaataatctccaataaggaaaacttgtatattgaa
gaatattctgtctctcaaacaacattagatcaggtttttgtgaactttgctaagcagcag
gtggaggatgaggaaattcctttgcatcctcgtgcagctggatcgaaccaagaaacaaag
gtgtctcctgcttcacagcagcaggcagttgcatag
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integrated database retrieval system
