Tympanuchus pallidicinctus (lesser prairie-chicken): 128072952
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Entry
128072952 CDS
T08967
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04140
Autophagy - animal
tpai04148
Efferocytosis
tpai05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128072952 (VPS16)
04148 Efferocytosis
128072952 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128072952 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpai04131
]
128072952 (VPS16)
Membrane trafficking [BR:
tpai04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128072952 (VPS16)
Hops complex
128072952 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF3939
Motif
Other DBs
NCBI-GeneID:
128072952
NCBI-ProteinID:
XP_052523165
LinkDB
All DBs
Position
Unknown
AA seq
838 aa
AA seq
DB search
MDCYTANWNPLGEEAFYRKFELYAMEWGLKEELRDCLVAAAPYGGPIALLKNNARKEKSP
SARPLLEIYSASGLLLASVPWKSGRLVQLGWTASEDLLCIQEDGTVLIYNLFCEFKRHFS
MGNEVLQNHVLEAKVFHTEYGTGVAILTGAHRFSLTTNIDDLKLRRMPEVPGLQKPPSCW
AVLTQDRVTVVLLAVGQDLYLLDNTSCSVVTPPGMSPSAGAYLQMAVSFNYRCLALFTDT
GYLWMGLATLKDKLCEFNSAIRSAPKQMVWCTRPRSRQRAVVLAWDRQLMVAGNSTECIR
FVLDEDSYLVPEPDGVRILSRTSHEFLHEIPEASQEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIKDQKLLPEAVSQCIEAAGYEHEPETQKSLLRAASFGKCFIDKFPPESFVR
MCQDLRVLNSIRDYQIGIPLTFTQYKRLTIEVLLDRLVLRRLYPLAIRICEYLRLPEIQG
VSRILAHWACYKVQQKDKSDEEVAYAINQKLGDTPGISYSEIAARAYDCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVYTVVLHLKNELNRGTFFMTLQNQPVA
LSLYRQFCKHQERETLKDLYNQDDNHQELGNFHVHSSYSEKRIEGRVGALQNAVDEYYKA
KNEFAAKATEDQIKLLRLQRHLQEDFDKPYLDLSLHNTVSTLIQDGHHKKAEQLYREFKI
PDKRYWWLKISALATRGDWEEMEKFSKSKKSPIGYLPFVEIAVKHHNRYEAKKYAPRVTP
EQRVKAFILVGDLEQAADAAIEHKNEAEMNLVLSKCSAATDSAVMEKLNRARAQLLKK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacacggccaactggaacccgctgggcgaagaggccttctaccgcaagttc
gagctgtacgccatggagtggggcctgaaggaggagctgcgggactgcttggtggcagct
gccccgtacggcgggcccatagctctgctgaagaacaacgccaggaaggagaaatccccc
agcgcccgcccgctgctggagatctactcggcctcggggctgctcctggccagcgtcccg
tggaagagtggccggctggtgcagctgggctggacagccagcgaggacctgctgtgcatc
caggaggatggcactgttctcatctacaacctcttctgcgagttcaagcgtcacttcagc
atgggcaacgaggtgctgcagaaccacgtgctggaggcgaaggtcttccacacggagtac
ggcaccggcgtggccatcctcactggagcgcaccgcttctccttgaccaccaacatcgac
gacctgaagctgcgccggatgcccgaggtgccgggtctgcagaagccaccctcctgctgg
gctgtgctgacccaggacagagtgaccgtcgtcctgctggcggtcggccaggacctgtac
ctgctggacaacacctcctgctctgtggtgacaccccctggcatgagcccctccgcgggg
gcctacctgcagatggccgtgtccttcaactaccgctgcctggcgctcttcactgacact
ggctacctgtggatggggttggccacgctgaaggacaagctctgcgagttcaacagtgcc
atccgctctgcacccaagcagatggtttggtgcacgcgtccccgcagccggcagcgcgcc
gtggtgctggcctgggaccggcagctgatggtggctgggaattccacagagtgcatccga
tttgtcctggatgaggactcctacctggtgccggagccagatggggtccggatcttatcc
cgcacctcccatgagttcctgcacgaaatcccagaagccagccaggaaatcttcaaaatc
gcttccatggcaccaggagcgctcctgctggaggcacagaaggagtacgagaaggagagc
caaaaggcagatgagtacctgagggagatcaaggaccagaaactgctcccagaagcagtg
agccagtgcatcgaggcagccggctatgagcatgagccggagacgcagaagtccctgctg
cgggcagcctcctttgggaagtgcttcatcgacaagttccccccggagagctttgtgcgc
atgtgccaggacctgcgggtgctcaactccatccgggactaccagatcggcatccccctc
accttcacccaatacaaacgactcaccatcgaggtcttgctggacaggctggtcctgcgg
cggctttaccccctggccatccggatctgtgagtacctgcgcctcccggagatccagggc
gtcagccgcatcctggcccactgggcctgctacaaggtgcagcagaaggacaagtctgac
gaggaggtggcttatgccatcaaccagaagctgggggacacgccaggcatctcctactct
gagatcgccgcccgagcgtacgactgcggcaggacagagctggccatcaagctgctggag
tacgagccgcgctccggggagcaggtcccactgctgctgaagatgaagcggagcaagctg
gccctgagcaaagccatcgagagcggggacacagacctggtctacaccgtcgtgctgcac
ctgaagaacgagctgaaccgtggcaccttcttcatgacgctgcagaaccagccggtggct
ctgagcctctaccgccagttttgcaagcaccaggagcgagagacgctgaaggacttgtac
aaccaggatgacaaccaccaggagctcggcaacttccacgtccactccagctactcggag
aagcgcatcgaagggcgggtgggagccctgcagaatgctgtggatgaatactacaaggcc
aagaacgagtttgctgccaaggccacagaggatcagatcaagctcctgcggctccagcga
cacctccaggaggactttgacaagccctacctcgacctctctctgcacaacactgtctcc
actctgatccaggacggtcaccacaagaaagctgagcagctgtacagggagttcaagatc
cctgacaagcggtactggtggctgaagatcagtgccctggccacccgcggggactgggag
gagatggagaagttctccaagagcaagaagtcgcccattgggtacctgccctttgtggag
attgctgtgaagcaccacaaccgctatgaggccaagaagtacgcaccccgcgtcacccct
gagcagcgggtcaaggccttcatcctcgtgggggacctggagcaggcggctgacgctgcc
atcgagcacaagaacgaggctgagatgaacctcgtcctgtccaagtgctctgccgccact
gacagcgccgtgatggagaagctgaaccgggctcgtgcccagctcctgaagaagtga
DBGET
integrated database retrieval system
