Tympanuchus pallidicinctus (lesser prairie-chicken): 128073653
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Entry
128073653 CDS
T08967
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04510
Focal adhesion
tpai04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128073653 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128073653 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tpai00536
]
128073653 (COL2A1)
Glycosaminoglycan binding proteins [BR:
tpai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128073653 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
128073653
NCBI-ProteinID:
XP_052524723
LinkDB
All DBs
Position
Unknown
AA seq
1459 aa
AA seq
DB search
EAAGGCVQDGQAYSDKDVWKPEPCRICVCDTGTVLCDEIICEELRDCPSPEIPFGECCPV
CPAEPPAAARQPGPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGP
RGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGP
RGPPGPTGAPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGP
PGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGL
PGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGA
QGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP
LGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPVGPPGE
RGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGD
AGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL
RGLPGKDGETGAAGPPGPAGPVGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGE
AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGL
QGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGP
PGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGP
SGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGP
KGVRGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQ
RGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGADGPPGR
DGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGM
PGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGP
VGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQ
TEKGPDPIRYMRADEAAGGLRQHDVEVDATLKSLNNQIESIRSPEGSKKNPARTCRDIKL
CHPDWKSGDYWIDPNQGCTLDAIKVFCNMETGETCVYPTPSSIPKKNWWTSKTKDKKHVW
FAETINGGFHFSYGDENLSPNTASIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLK
KAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPM
DIGGAEQEFGVDIGPVCFL
NT seq
4382 nt
NT seq
+upstream
nt +downstream
nt
cggaggccgccgggggctgcgtgcaggacgggcaggcttacagcgacaaggacgtttgga
agccggagccgtgccggatctgcgtgtgcgacacggggaccgtgctgtgcgacgagatca
tctgcgaggagctgcgggattgccccagccccgaaatccccttcggagaatgctgccccg
tctgccccgcagagccgcccgccgccgcccgacaacctggccctaagggacagaagggag
aacctggagatattaaagatgttgtaggaccccgagggcctcctggaccgcagggcccag
caggagagcagggacagcgaggggaccgcggtgagaagggggagaagggtgctcctggcc
cccgtggaagggatggagaacctggcacccctgggaaccccggcccccccggcccccctg
gacctcctggaccccctggacttggtggaaactttgcggcgcagatggcgggcggcttcg
atgagaaggcgggtggagcgcagatgggcgtcatgcagggacccatgggccccatgggac
cccgcggcccccctggccccactggtgcacctggtccccaaggatttcaaggcaaccccg
gtgagcccggtgaacccggtgctgctggtccgatgggtccccggggacctccgggaccac
ctgggaaacccggtgacgacggtgagacaggcaaacccggcaaatctggtgaacgtggcc
cccccggcccccagggcgctcgtggcttccctgggactcctggtctccccggagtgaaag
gccaccgaggttaccctggtttggacggtgccaaaggagaggctggggctcccggagcca
agggtgaatctggttcaccgggtgagaacggctcccccggccctatgggaccccgtgggc
tgcctggagagcgaggacgtcccggcccctctggtgctgcgggtgctcgaggcaatgacg
gcctccccggccctgctggaccccctggacccgtcggccctgccggagctcctggcttcc
ctggagcccctggttcaaagggtgaagccggccccactggcgcacggggtccagagggag
cccaaggaccccgcggtgaatctggcacccccggctctcctggccccgctggcgcacctg
gtaaccctgggactgatggcatccctggtgccaagggctcagcgggcgccccaggcattg
caggcgctccaggattccccggcccgcgcggcccccccggaccccaaggtgccaccggac
cactgggacccaaaggacagacgggtgaacccggcatcgcaggcttcaagggcgagcaag
gaccgaagggcgagacgggccccgcaggaccccaaggtgcccccgggccggctggcgagg
aaggcaagagaggagctcgtggtgaacctggtgccgctggccctgtgggcccccccggag
aaaggggcgctcctggcaatcgtggattccccgggcaggatgggctggccggacccaagg
gtgctccaggtgaacgcggccccgctggtctcgccggtcccaaaggtgccactggtgacc
ctggacgtcctggagaacctgggctgcctggagcgaggggtctcaccggccgccccggcg
atgcgggacctcaaggcaaagtcggtccgactggtgctcctggcgaggatggccgccccg
gccctcccggccctcagggtgctcgtgggcagcccggtgtgatgggtttccccggtccca
aaggtgctaatggtgagcctggaaaagctggagagaaaggactgcctggcgccccagggc
tgcggggtcttcctggtaaggatggggagacaggagctgctggaccccccggacccgctg
gtcctgtgggtgagagaggagagcaaggagcccccggtccttccggattccagggactgc
ccggaccaccaggtccccctggagagagcggcaaacccggagaccagggtgttcccggag
aagctggtgcccccggtcttgttggtcccagaggtgaacgtggattccccggtgaacgcg
gttctcccggtgcccaagggctgcagggtccccgtgggctgcctggaacgcctggcactg
atggacccaagggtgcgaccggtccggctggtcccaacggtgcccagggtcccccaggac
tgcagggaatgcctggtgagagaggagcagctggcatcgctggccccaaaggtgaccggg
gagatgttggtgagaaaggacccgaaggagctccgggcaaggatggcgcacgtggtctga
cgggtcccattggtccccctggccccgctggccccaacggcgagaagggtgaatccggcc
ctcctggtccatctggtgctgccggtgcccgtggagcccctggcgagcgtggcgagcctg
gtgcccctggtcctgctggatttgctggcccgcctggtgccgacggacaacctggtgcca
aaggcgagcagggagagcctgggcagaagggtgacgctggtgctcctggtccccaaggtc
cctccggcgctcctggccctcagggtccaactggtgtcactggtcccaaaggagctcgcg
gggctcagggtccccctggagccacaggattccccggagccgccggccgcgttggaccac
ccggccctaatggtaacccaggcccccccggaccccctggctctgctggcaaagatggcc
ccaagggtgttcgtggtgatgccggcccccctggccgtgctggagaccccggcctccaag
gccccgccggcccccctggcgagaagggcgaacctggcgaggacggccccgcgggtcccg
acggccccccagggcctcaaggtttggcaggacagcgtggtatcgtgggtctcccagggc
agcgtggtgagagaggcttccctggacttccagggccatcgggagaacctggaaagcaag
gagcacctggctctgcaggcgaccgaggtccccccggccccgtgggcccccctgggctga
caggtcctgctggagaacccgggcgtgagggcaaccctggtgctgacggacccccgggca
gggatggtgcagctggcgtgaagggtgaccgtggtgagactggccctgtgggtgcccctg
gtgctcccggagcccccggtgctcctggtcccgtcggtcccaccggaaaacaaggagaca
gaggcgagacgggtgcgcaagggcccatgggtccctctggtcccgctggagctcgaggaa
tgccgggtccccaagggcctcgtggtgacaaaggtgagacaggagaggctggagagagag
ggctgaagggccaccgcggcttcaccggtctgcagggtctgcctggaccacctggccctt
ctggagaccaaggtgctgccggtcctgctggtccctccggtcccagaggtccccctggtc
ccgtcggcccctctggcaaagatggctccaatggcatgcctggccccatcggtccccccg
gtccccgcggacggagcggtgaacctggccctgcgggtcctcctggaaatcccggtcctc
ccggtcctcccggccccccgggcaccggcatcgacatgtcagcttttgccggactgggtc
agacggaaaagggccccgaccccatccgctacatgagggcagacgaggcggccggagggc
tgcggcagcacgacgtggaggtggacgccacgctcaaatccctcaacaatcagatcgaga
gcatccgcagccccgagggttccaagaagaacccagccaggacctgccgcgacatcaagc
tctgccaccccgactggaagagcggagattactggattgacccgaaccagggctgcacct
tggacgccatcaaagtgttctgcaacatggagacgggtgagacctgcgtctacccgaccc
ccagcagcatccccaagaagaactggtggaccagcaagacaaaggacaagaagcacgtct
ggtttgcagagaccatcaacggcggtttccacttcagctacggcgatgagaacctgtccc
ccaacaccgccagcatccagatgaccttcctgcgcctcctgtccaccgagggctcccaga
acgtcacctaccactgcaagaacagcatcgcctacatggacgaggagacgggcaacctga
agaaagccatcctcatccagggatccaacgacgtggagatcagagctgagggcaacagca
ggttcacctacagcgtcttggaggacggctgcacgaaacacactggcaaatggggcaaga
ctgtcatcgagtaccggtcgcagaagacctcgcgcctgcccattgtagatattgcaccta
tggacattggcggagccgagcaggagtttggcgtggatattggcccagtctgcttcttgt
aa
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