Tympanuchus pallidicinctus (lesser prairie-chicken): 128073715
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Entry
128073715 CDS
T08967
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128073715 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128073715 (NUP188)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128073715 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
128073715
NCBI-ProteinID:
XP_052524840
LinkDB
All DBs
Position
Unknown
AA seq
1766 aa
AA seq
DB search
MAAGGLCARSSRELWTILLGRSALREPAQIASELNKHWQRLLEGLSYYKPPSTTSAEKVK
ADKDVAALLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKAVLQDERQSQALM
LKLADYYYEERICILRCVLHLLTYFQDERHPYAAQYFQCVEKLEKELVPNYRKQFEELYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYHAYFEMVPDDLLVFAKLFKEQ
GFGTRQTNRHLIDESMDHLVDHIGYLSALIVVEGMEIDTLHERALDGRTEEHKLANNAHI
HQEMDNQLLHLGDVPHHAPVLLAWALLRHTINPEESASVIRRMGSTAIQLNVFQYLTKLL
KSLSSGGKNCTFSTACMCIYELLSFVLTSLELHTLGNQQDIIDTACEVLSASSIPQLFWK
TEPTAGLGIILDSVCGMFPHLLTPLLQLLQALVSEKSTAKKVYSFLDKMSFYIELYKHKP
PDVISHEDGTLWRRQAPKLLYPLGLGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTL
FTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLT
TVISPPMDVIASCVNCLTVLAARMPAKVWTDLHHTGFLPFVANPVSSMNRMISADGMNAG
GYGNLLMSIEQPQGEYSVTISFLNLITTLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHKW
RYNSHGVREKIGCLILQLIHAILNLCPEMDPRSSNVPSLQSLCIFSLANTEAGQAVINIM
GIGVDTIDMVMASQSSSDESQSQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALTQ
HGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLT
RLQSRIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVL
ELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLPP
PSETSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLKNFSTKKRFAYWSEYVKSLA
CYVAETEGSSCASMTEYQMLISAWRMLLIISTSHADIMHLTDPAVHQQLFLDVLNGTKAL
LLVPTSVSCLQLGSMLCTLLLILLKKWKSELGSVDKIINSLTQILEGVLQADQQMMEKTK
AKVFSALIAVLQMKEMKAHGQQTASMDWCQQSGEMGGQCCWEQLQNVNEIPQYSQLVLSV
CETLQDEVIALFDQTRHSLTLGDATDDKDSMETDDASRVKHKDQRDGVCVLGLHLAKELC
EVDDDGDYWLQITRKVPVLPTIFTALEISLRVKQNLHFTEASLHLLLTLARTQQGAAAVA
GAGVTQSVCLPLLSVYQLSTNGAIQTSASSRKSQDAPSWPGVYRLSMSLMERLLKTLRYN
FLTEALDFVGVHQERILQCLNAVRTVQSLACLEEADHTVGFILQLSNFTKEWHFHLPQLM
RDMQVNLCYLCQACTSLLHSRKMLQHYLQTKNGDSLPSSVTPRVQRNPQTSSKHPSPESE
AAEQKALLMVQYSLLKILSKSLAALRHFTPDVCQILLDQSLDLAEYNVLFVLSFTTPAFD
SDVAPSFGTLLATVNVALNMLGELDKKKEPFPQPAGLNMQEGTKTLKSLLMFTMENCFYL
LISQAVRYLRDPAVHPRDKQRMKQELSSELSTLLSSLSRYFRRGAPSSPASGVLPSPQGK
SASKLGPEGQEPLFQLVQAFVRHVQR
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggcgggctgtgcgcgaggagcagcagagaattgtggacaattctcctgggc
agatcagcattaagagaaccagcacagattgcatcagaactgaacaagcactggcagaga
ttgttagaagggctttcgtactacaaacctccaagtacaacttcagcagagaaggtaaaa
gctgacaaagatgtagctgctctactaaaagagttgggtctgagggtcagcaagtttttg
ggtctggatgaagagcagagcgtgcagttgttgcagtgttatcttcaggaggattacaga
ggaacaagggactccctgaaggcagttcttcaggatgaaaggcagagtcaggctctgatg
ttgaagcttgctgactattactacgaagagaggatctgcattctgcgctgtgtcctccat
ctgctcacttattttcaggatgagagacacccttatgcagcgcagtacttccagtgtgtt
gagaagttggaaaaggagcttgttcctaattaccgtaagcagtttgaagaactgtacaaa
gcagaagctcccacctgggaaacacatggaaatctcatgacagaacgtcaggtttcccgt
tggtttgtgcaatgcctccgtgagcagtccatgctcctggaagtcatcttcctctaccat
gcctactttgaaatggtacctgatgaccttctggtatttgcaaagttgttcaaggagcag
ggatttggcactagacaaaccaacaggcatttgatagacgagagcatggatcacctggtg
gatcatattggctaccttagtgctcttattgtggtggaaggcatggaaatcgacaccctc
catgaacgagctttggatggtaggacagaggagcacaagttagccaataatgcacatatc
caccaggagatggacaatcagctgctgcacttaggggatgtcccacatcacgctccggtg
cttttggcttgggctctgctccgtcacaccatcaaccctgaggagtcagccagtgttatc
aggagaatgggcagcactgctatccagctcaacgtgttccagtacctgacaaagcttctg
aaatcacttagcagtggaggcaagaattgtacattcagcacagcttgtatgtgcatttat
gagcttctttcctttgtcctgacatcgctggaattgcacacattgggcaatcagcaagat
ataatagatacagcatgtgaagttctgtcagcttccagcattcctcagctcttctggaag
acagaaccaactgcaggtctgggtattatcctggacagtgtatgtgggatgttcccccac
cttcttactcctctccttcagctgctccaggctcttgtgtcagagaaatctactgcaaaa
aaggtgtacagtttcctggataaaatgtctttctacatagaactctacaagcataaacct
cctgatgtgatctctcatgaagatggcaccttgtggcgaaggcaggctccaaagctcctc
tatcctctgggactaggtcagacaaatttgcggatacctcagggaacggtgggccaagtg
atgctggatgatcgagcttatttagtacgatgggagtattcctacagcagctggacactg
tttacctgtgagattgaaatgctgctccatgttgtatccacagcagatgtgattcagcat
tgccagagggtcaagccaatcattgatctggttcacaaagtcatcagcactgatgtatcc
atagcagattgccttctgccaatcacgtcacgaatctacatgctgctgcagaggctgaca
actgtaatctctccccctatggatgttattgcttcttgtgtcaattgtttgacagtactg
gctgcacggatgccagccaaggtttggactgaccttcaccatacaggcttcttaccattc
gttgccaatccagtgtccagtatgaatcgcatgattagtgcagacggaatgaatgctggg
ggctatggaaacctgctgatgagcatagagcagcctcaaggcgagtacagcgttaccatc
tccttcctgaacctcatcacaactctggtccggggacagcttggtagcacccagagccaa
gggcttgtgccctgcattgtgtttgtcctgaaggagatgttaccaaattaccacaaatgg
cgttacaactctcatggagtgagagagaaaattggatgcctcatcctacaattgattcat
gcaatactgaatttatgccctgaaatggatcctcgcagcagcaatgtccccagccttcag
tccttgtgcatcttcagtctggccaacactgaagcagggcaagctgtcattaacatcatg
gggattggtgtggacactattgacatggtcatggcctcccagtctagtagtgatgaatca
caaagccaaggccagctgctgatacaaactgtgaagctggcattctcagtcaccaataat
gtcatacgattgaaacccccctctagtgtggtatctccactggaacaggcacttactcag
catggtgctcatggaaacaatcttattgctgtcttggccaaatacatctaccacaagcac
gaccctgcactgccacgcctggccatccagctgctcaagcgactggctacggttgctccc
atgtctgtttatgcctgccttggtagtgatgctgctgccatccgtgacgccttcctcacc
cgcctgcagagcaggattgaggacatgcggatcaaggtcatgatactggaattcctcaca
gtggcagtggagacgcagcctgggctcatcgagctcttcctcaacttggaagtgaaggat
ggcagtgatggctcaaaggagttcagtctgggggagtggagttgcctccaagtggtgtta
gagctgatagactccaaacagcaggagaggtactggtgtcctcccctcctgcaccgtgct
gccatcgccttcctgcacgccttgtggcaggaccgccgagacagcgccatgctggttctg
aggacaaagccaaagttttgggaaaacttgactaatccactgtttgggactcttcctcca
ccttcagagacatcagagctcagtgtcttggatacctgtgccttaatcatgaaaatcatc
tgcttggagatctactatgttgtcaagggctccctggatcagtccctgaaagacacgctg
aagaatttctccaccaaaaagcgctttgcttattggtcagaatatgtgaaatcattggcc
tgttatgtggcagagacagagggcagtagctgtgcctccatgacagaatatcagatgctc
atctcggcctggaggatgctgctgattatatccactagccatgctgatataatgcatctc
actgatcctgcagttcatcagcaattgtttctggatgttctaaatgggaccaaggctctg
cttctagttcccacgtcggtatcttgcctgcagctgggctctatgctgtgtactctgctt
ctcatcctgctgaagaagtggaagagcgagttgggttctgtggataaaatcataaactcc
ttgacgcagattctggagggagttctacaggctgaccagcagatgatggagaaaaccaaa
gccaaagtgttctcagctcttatcgctgtgctgcagatgaaagagatgaaagctcatgga
cagcagactgcatccatggactggtgccagcaatctggagaaatgggtgggcagtgctgt
tgggagcagctacagaatgtgaatgagatccctcagtactcccagctggtgctgagtgtg
tgtgaaacactccaggatgaggtcattgcactctttgatcagactcgacacagcctgacc
ttgggggatgccacagatgacaaggacagcatggaaacagatgatgcctcccgagttaaa
cacaaggaccagcgagatggggtttgtgttttgggtctgcatctcgcaaaagagctctgt
gaagttgatgatgatggagactactggctgcagatcactaggaaagtccctgtgcttcct
accatctttactgctttggagatcagcctgagagttaaacaaaaccttcacttcacagag
gcctcattacatctgctgctgaccttagcaaggacacaacagggagcagcagcagtggct
ggggctggtgtcacacagagtgtctgcctgcccctcctgagcgtgtaccagctcagcact
aatggagccattcagacctcggcttcgtctcggaagtctcaggatgctccctcctggcct
ggcgtctatcgcctctccatgtcgctgatggagcgtctcctcaagacactgcgatacaac
tttctgacagaagcactggactttgttggtgtccatcaagagaggattcttcagtgcctg
aatgcagtacggacagtacagagcttggcttgtctggaggaggctgatcacactgttggc
ttcattctccagctgtcaaatttcacaaaggaatggcatttccacctgccacagcttatg
agggacatgcaggtgaatctgtgttacctgtgtcaggcctgcacctccctgctgcacagc
cgcaaaatgctccagcactacctgcagacgaaaaatggtgactcccttccatcaagtgtg
actccacgagtgcagcgtaatccccaaacctcttccaaacaccccagccctgagtcagag
gcagcagagcagaaggcactgctaatggtgcagtacagcctcttgaaaatcctcagcaaa
tctcttgctgctctgcgccacttcacccccgatgtctgccagatactcctcgatcagtca
ctggaccttgctgagtacaacgtgctctttgtcttgagtttcaccacaccagcctttgat
tcggatgtcgccccttcctttgggaccctccttgccacagtcaatgtggccctcaacatg
ctaggagagttggataagaagaaggaaccttttcctcagcctgcagggctgaatatgcag
gagggaaccaaaacccttaagtctctgctcatgtttacaatggaaaactgtttctacctg
ctcatctcccaggctgttcggtacttgagagacccagctgtgcatccccgcgataagcag
cggatgaaacaggagctgagctctgagctgagtacactgctttccagcttgtctcgttat
ttccgccgtggtgctccctcctcacctgccagtggggttcttccctctccccagggaaag
tctgcctccaagctggggcctgagggccaggagcctttgtttcagctcgtgcaggccttc
gtccggcatgtgcagagatag
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integrated database retrieval system
