Tympanuchus pallidicinctus (lesser prairie-chicken): 128073820
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Entry
128073820 CDS
T08967
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpai03016
]
128073820 (RTCB)
Enzymes [BR:
tpai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128073820 (RTCB)
Transfer RNA biogenesis [BR:
tpai03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128073820 (RTCB)
Prokaryotic type
tRNA splicing ligases
128073820 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
128073820
NCBI-ProteinID:
XP_052524978
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagttgcagtacttggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcatgtggagggagttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcgggt
ggctttttgcctgctatgaaacagattgggaatgtagctgcattgcctggaatcgttcat
agatccataggtctcccagatgtccactctggctatggctttgccattggcaacatggca
gcctttgatatgaatgatcctgaagcagtggtgtcaccaggtggtgtcggattcgacatc
aactgcggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccacattcctgtcggtgttggttcaaagggtgtc
atccccatgaacgccaaggatttggaagaggctctagagatgggtgtagactggtctctc
cgggaaggctatgcctgggcagaggacaaggaacactgtgaggagtatggaagaatgctg
caggctgatcccaacaaagtctcttcgagagcaaagaagaggggcctgcctcagctgggg
accctgggagcaggaaatcactatgctgagatccaggttgtggatgacatttacaatgaa
tatgctgccaggaagatgggcatcgaccacaaaggacaggtttgcgtcatgatccatagt
ggcagcagaggtttgggccatcaggttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaacgatcgccagctagcgtgtgccaggattgcctct
gtggagggacaggattacttgaagggaatggcagctgctggaaactatgcgtgggtcaac
cgctcttctatgactttcttaacaagacaggcttttgccaaagtcttcaacacaacccca
gatgacctcgatatgcacgttatctacgatgtgtctcacaacattgccaaagtggagcaa
cacgtagtggacgggaaggaaaggactctactggtgcacagaaaaggatcaaccagagcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcctgttctg
attggtgggactatgggcacatgtagctacgttcttactggcacagagcaaggcatgact
gagacgttcggaactacttgccacggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtactggacaaactggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcacctgagtcttacaagaatgtgacagat
gtcgttaatacctgccatgcagctggcatcagcaagaaagccattaagttgagacctatt
gctgttataaaaggctag
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