Tympanuchus pallidicinctus (lesser prairie-chicken): 128074600
Help
Entry
128074600 CDS
T08967
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128074600 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128074600 (MTREX)
03041 Spliceosome [BR:
tpai03041
]
128074600 (MTREX)
03009 Ribosome biogenesis [BR:
tpai03009
]
128074600 (MTREX)
03016 Transfer RNA biogenesis [BR:
tpai03016
]
128074600 (MTREX)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128074600 (MTREX)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128074600 (MTREX)
Spliceosome [BR:
tpai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128074600 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
128074600 (MTREX)
Ribosome biogenesis [BR:
tpai03009
]
Eukaryotic type
Pre-60S particles
Helicases
128074600 (MTREX)
Transfer RNA biogenesis [BR:
tpai03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128074600 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
128074600
NCBI-ProteinID:
XP_052526568
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MADAFGDELFSVFEGDVGAARSKAGVAEAARGLGKRQEDIPSGAGLGKTRRDAEVDSTEG
ASSGKKPKLEDVTSEDNNLADLMPHVKVQAVETVEGCTHEVALPADEEFTGLKPRTGKPA
KEYPFSLDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRP
TPLQHYIFPAGGDGLRLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSN
VFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSD
EDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPA
RTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLK
GSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQYN
KIIIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDDFGWGV
VVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNAATEAAKPARPDEKGEMQVVPVLV
HLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKV
IQKVEAFEHRMYSHPLHNDPNLETIYKLCERKAQIAMDIKAAKRELKKARTVLQMDELKC
RKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFV
FQENSNEMPKLTEQLAGPLRQMQECAKRIARVSAEAKLEIDEENYLNSFRPNLMDVVYTW
ANGASFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcgtttggggatgagcttttcagcgtgtttgagggtgacgtgggcgctgcc
aggagcaaagcgggtgtcgctgaggctgccagaggactgggaaagcggcaggaggacata
ccgtcgggagccgggctggggaaaaccagaagggatgctgaggtcgacagcacggaagga
gcgagttcgggaaagaagccgaaactggaagatgtcacgtcagaagataataatctggca
gacctgatgccacatgtgaaggttcaagctgtggaaactgttgaaggctgcacacatgag
gttgcacttccagcagatgaagagttcacaggtctgaagccaaggactggaaaacctgca
aaagaatacccatttagtcttgatgcctttcagagagaagctattttgtgtgtagataat
aaccagtctgtattggtgtcagctcatacttcagctggtaaaacggtgtgtgcagagtat
gcaattgccttggccttgagagaaaaacagcgtgtgatatttacaagtccaattaaagct
ttgagtaatcagaagtaccgtgagatgtatgaagagttccaggatgttggtttgatgact
ggagatgtcaccattaatcctacagcttcttgtttggtgatgacaacagagattttgaga
agtatgctctacagaggttctgaggttatgcgagaagttgcatgggttatttttgatgaa
atccattacatgagagattcagaacgtggtgtggtttgggaagagacaattattttgctc
cctgacaatgttcattacgtgttcctttctgcaactattccgaatgctcgtcagtttgct
gaatggatttgccatcttcacaaacagccttgccatgtgatatatacagactatcgacct
actccactgcagcattacatattcccagcaggaggagatggactacgtcttgttgttgat
gaaaatggagatttcagagaagacaattttaatacagcaatgcaagtgctcagagatgca
ggagacttagcaaaaggagaccagaagggcaggaaagggggaacaaaaggcccttccaac
gtatttaagattgtgaagatgatcatggagaggaatttccagcctgtaatcattttcagc
ttcagtaagaaggattgtgaagcctatgctcttcagatgacaaagttagattttaataca
gacgaagaaaaaaagatggttgaagaagtgttcaataatgcaattgactgtctgtcagat
gaagacaaaaaacttcctcaggttgagcatgtgctgcctcttctgaaacgtggaataggc
atccatcatggtggtctgcttcctatcttaaaagaaaccatagaaattcttttctcagag
ggcctcataaaggccttgtttgcaacagaaacttttgctatgggaattaatatgccagcc
aggactgtactgtttacaagtgcctccaaatttgatgggaaagatttccgatggatctcc
tcaggtgaatacattcaaatgtcaggtcgtgcaggtcgccgaggtatggatgacagagga
atagtaattcttatggtggatgaaaaaatgagtccaacaattggcaagcaacttttaaag
ggttcagctgatcccttaaacagtgcattccacctgacctacaacatggtattgaacttg
cttagagtagaagaaattaaccccgaatacatgttagagaaatcgttctaccaatttcaa
cattacagagctattccaggagtggtagaaaaggtgaataaattggaagaacagtacaac
aaaataataattcccaatgaagaaaatgtggtcatatactataaaatccgacagcagctt
gcaaaactgggtaaagagattgaagaatatattcacaagccaaagtattgcttgcccttt
ctacagccaggaagactggtaaaggtgaaaaatgaagatgatgactttggatggggagtg
gtggttaatttctcaaagaaatccaatgttaagcctaattctggtgaattggacccttta
tatgtagttgaagtgctcctgcactgcagcaaagaaagcctgaaaaatgctgccactgag
gctgcaaagccagcaagacctgatgagaaaggagagatgcaggtcgttcctgttctggtg
catctcctctcggccatcagcagtgtcagactgtacatacccaaagacctgaggcctatt
gacaacaggcaaagtgtgctgaaatctatacaggaagtacagaagcgatttcctgatggg
gtgccattattggatcctattgatgacatgggtatcaaagatcaaggactgaagaaagtc
atccagaaagtagaagcatttgagcataggatgtattcacatcctcttcataatgatccc
aatttagaaactatatataaactttgtgaaagaaaagcacagattgctatggatattaaa
gcagcaaagcgagaactgaaaaaggccagaactgtcttacaaatggatgaactcaaatgc
cgcaagcgtgttttgaggaggctgggttttgccacatcttccgatgtcattgagatgaaa
ggacgtgttgcctgtgaaatcagcagtgctgatgaacttctcctgacagagatgatgttt
aatgggctcttcaatgacttatctgcagaacaggcaactgcgctgctaagctgttttgtc
tttcaagagaactccaatgaaatgccaaaactgacagagcagctggcaggaccacttcga
caaatgcaggagtgtgctaaaagaatcgccagggtatcagcagaagcaaaactggaaatt
gatgaagaaaattacttaaactctttcagacccaacctcatggatgttgtatacacatgg
gcaaatggggctagctttgctcacatttgcaaaatgactgatgtctttgaaggtagcata
attcgttgcatgagaaggctagaagaattgcttcggcaaatgtgtcaggcagcaaaagca
attggaaacacagagctggaaaataagtttgcagagggtattacaaaaatcaagagagat
attgtgttcgcagcgagcctatacctgtaa
DBGET
integrated database retrieval system
