KEGG   Tympanuchus pallidicinctus (lesser prairie-chicken): 128075833
Entry
128075833         CDS       T08967                                 
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tpai  Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04382  Cornified envelope formation
tpai04510  Focal adhesion
tpai04512  ECM-receptor interaction
tpai04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tpai00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128075833 (COL4A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128075833 (COL4A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128075833 (COL4A6)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    128075833 (COL4A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tpai04147]
    128075833 (COL4A6)
   00536 Glycosaminoglycan binding proteins [BR:tpai00536]
    128075833 (COL4A6)
Exosome [BR:tpai04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   128075833 (COL4A6)
Glycosaminoglycan binding proteins [BR:tpai00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128075833 (COL4A6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 128075833
NCBI-ProteinID: XP_052528888
LinkDB
Position
Unknown
AA seq 1700 aa
MGPAPGRAGALLLLLPVLLLCLRAEPASAGGKKSYSGPCGGRDCSAGCKCFPEKGARGRP
GPIGIQGPIGAPGFTGPEGLPGAKGERGAVGPPGPAGHKGNKGSMGVPGFQGINGIPGHP
GQSGPRGPPGLDGCNGTMGSPGASGTDGFPGTPGLPGRPGPKGLKGEPVFAQGSLKGMKG
ENGLPGLDGISGSRGFPGPTGPAGPIGLPGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGD
VGLPGPPGPPPSTGILEFMGFPKGKQGEKGEPGPQGLPGDKGLPGLPGFGGVGEKGEKGV
PGLPGGRGLLGLDGSNGIPGRKGHPGIPGYPGLDGVEGTKGEVGDIGPPGPPIIVDKEGV
VISGAPGDPGNPGIPGPPGDEGISGLPGFPGAPGFPGLEGDGMGPGGSPGIPGVKGEMGE
PGRATVGSPGAPGRDGLPGLPGAPGLPGSSRPSFLPDGILDGRTGAPGEPGQRGLPGALG
PKGYKGDAGDCACDGGITRAGLKGISGPQGPPGSRGVPGIKGVSGDPGTVGAPGLRGPLA
SAGQQGLPGHKGEKGDSSYATGRGAPGDRGATAPIGPSGFPGTPGRDGLPGLPGPPGPPG
DGGLGFPGEKGLPGLPGSKGHPGEIGSPGIGYPGPAGLRGPPGDPGMDGSPGQAGLPGPP
GITLPCIVPGAYGPPGTPGLPGLPGPKGSKGFPGIPGQPGLHGSKGQPGSPGIISLQGEP
GFPGPRGEQGSQGLPGLDGTDGLPGKMGASGLAGTKGAPGDVFGAESGAQGERGRPGLSG
DKGLAGDLGFPGPKGLDGRPGLLGVKGELGNPGYSGVPGLRGPPGPGGPFGIKGKPGPLG
SAGLAGAPGLPGVKGVTGDVGPQGPAGMKGFPGLDGAPGPPGERGFLGPPGPFGQDGRPG
FFGPKGEKGSSGLLGFPGMPGLPGVPGVNGFKGTPGTVGEKGSPGVLGLQGQKGDRGDVG
PPGLPVLGAQEQALQLKGDKGDPGLAGLGGFPGPRGDKGIPGSRGQPGLPGPVGSASRER
GFHGDQGLPGPSGQLGLPGQKGARGIIGFPGMPGERGSDGITGILGFPGPIGLPGPKGDQ
GESAGVPGTAGVKGERGDPGFPGERGREGLKGESGYPGSTGVNGVKGGPGDLGQEGPAGI
PGNAGLRGFSGPPGPPGQPGSVGFPGARGTAGPKGFHGFPGLNGLNGLPGTKGSPGTPGL
SEVGLKGPAGLPGLKGEEGSPGLGRGAVGFPGPKGSSGDVGPPGPVGLPGLPGTPGVSLP
SDIRGRPGDAGHPGLDGSSGLPGPPGPRGPPGPAFDQGDTGNPGFPGVPGLQGGKGDVGP
AGPIGLPGVSGFKGVRGEPGLMGMPGKDGPPGDPGYPGLKGEMGRRGLPGQPGAPGVTPQ
AEEITAPAGLPGLPGIDGVPGFDGDPGFQGPVGKPGAKGLPGRSGLKGRDGLPGSPGIAG
DPGPLGAPGPQGFEGAAGKPGALGLPGMPGRSMGVGYTLVKHSQSDQVPPCPVGMNKLWD
GYSLLYVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPI
PMMPVSSNQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGA
EGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQSQQFVGAPPSET
LKAGQLRTRVSRCQVCMKNL
NT seq 5103 nt   +upstreamnt  +downstreamnt
atgggcccggccccggggcgcgcaggggcgctgctgctgctgctgccggtgctgctgctg
tgtctgcgcgccgagccggcgagcgcgggtggaaagaagtcttacagtgggccgtgtgga
ggacgcgactgcagtgctggatgcaaatgtttcccagagaagggtgcgaggggtcggcca
gggccaattgggattcaaggaccaataggtgctcctggatttactggtccagagggtttg
ccaggagcaaaaggtgagagaggagcagtgggcccccctggaccagctgggcacaaaggc
aacaagggttcaatgggagttccaggatttcaaggcatcaatgggatcccaggtcaccct
ggccagtctggacccaggggtccacctggcctcgatggctgcaatggaaccatggggagt
cctggtgcttctgggacagatggatttcctggcacacccgggctgccgggtcgtcctggc
ccaaaaggtctgaaaggagaacctgtttttgctcaaggcagccttaaaggaatgaaggga
gaaaacggtcttcctggtttggatggtatttctggctccagaggttttccaggtccaaca
ggtcctgcaggccctataggattaccaggtttgcaaggtccagtgggtcctcctgggcca
ccaggtccaaaaggtaatatgggattaggctttcaaggagagaaaggagaaaaaggtgat
gtaggactgcctggccctccgggtccccctccatcgactggaatactagaattcatggga
ttcccaaaggggaaacaaggagaaaagggtgagccaggccctcaaggattgcctggagac
aaaggattgcctggactgccgggttttggtggtgttggagaaaaaggagaaaaaggtgtg
cctggtttgccaggtggcaggggtcttttggggctggatggatccaatggcattccaggg
agaaagggtcatccaggtattccaggctatccaggactggatggagttgaaggcacaaag
ggtgaagtaggtgacattggtcccccaggccctcctatcattgttgacaaggaaggtgta
gtaatttcaggtgccccaggtgaccctggaaacccaggaatacctggtcctccaggagat
gaagggatcagtggcctaccaggttttccaggagctccagggtttccaggcctggaggga
gatggaatgggccctggagggtctccaggtattcctggtgtgaagggtgaaatgggagaa
ccaggaagagcaacagttggatcaccaggcgctccaggaagagatggtttacctggtctg
ccaggagcaccaggattgcctgggtcatcacgcccttcatttctcccagacgggatcctg
gatggaaggactggtgccccaggggagcctggacaaagaggacttccaggagctttgggt
ccaaaaggttacaaaggagatgcaggtgattgtgcttgtgatggaggaattacaagagca
ggtctaaaaggcatctcaggtccacagggtccaccaggaagtcgtggtgtgcctgggatt
aaaggtgttagtggagacccaggcactgtgggtgcaccaggactgcgaggccctctggct
tcagctggccagcaaggtcttccaggccataagggagaaaaaggtgattcatcctacgca
acaggcagaggtgctcctggggaccgtggtgccactgcacccataggaccatcaggcttc
ccaggaactcctggcagggatggacttccaggtttgccaggcccaccaggtccaccaggt
gatggtgggctaggtttccctggtgaaaaaggtctgccaggattacctggctccaaaggc
catcctggagagatcggttctcctggcattgggtatcctggccctgctggacttcgtggg
ccgccaggtgacccagggatggatggttctccaggacaagcaggtctgccaggccctcca
ggtatcaccttgccctgcatagttcctggagcatatggtcctcctgggactcccggcctt
cctgggttgccaggtcccaaaggcagcaaaggctttcctggcattccggggcagcctgga
ttacatggatctaaaggacagccagggtctccaggaataattagcttgcaaggggaacct
ggtttccctggacctcgaggagagcaagggtcacaaggacttccaggattggatgggaca
gacggtttgcctgggaagatgggtgcttcaggcttagctggaactaagggagctcctgga
gatgtatttggtgctgagagtggagctcagggggagcgtggccgacctgggctctcaggg
gataaaggacttgcaggtgatcttgggtttccaggaccaaaagggctggatgggagacca
ggcctcctaggtgttaaaggcgagctgggtaatccagggtattcaggtgtccccggattg
cggggacctcctggtcctggaggtccttttggcattaagggaaaaccaggaccactggga
tcagctggccttgcaggagcaccaggacttcctggagtcaaaggagtgactggggatgta
ggtcctcaaggccctgctggtatgaaaggcttcccagggcttgatggtgctcctggacct
cctggggaaagaggattcttaggaccacctggaccttttggtcaagatggacgtccaggt
ttctttggaccaaaaggtgaaaaggggtcttctggcctccttggtttcccaggcatgcca
ggcctgcctggtgtccctggggtcaatgggtttaaaggaactcctggcacagtgggagaa
aaaggaagccctggagttctgggacttcaaggtcaaaaaggtgacagaggcgatgtaggt
ccacctggtcttcctgttcttggggctcaagagcaggcactgcagttgaaaggagacaaa
ggagatcctggattagctggacttggaggattcccaggacccagaggtgataaaggaatc
ccaggaagccgtggacagcctggtcttcctggacctgttgggtcagcaagcagagagaga
ggttttcatggtgaccaaggcctccctggtccatctggacagcttgggctgccaggacag
aagggtgcacgtggtataataggatttccaggaatgccaggagagaggggttcagatggt
atcacaggaatacttggattcccaggacctattggcctccctggtccaaagggtgaccag
ggagagtctgctggtgttcctggcactgctggagttaaaggagaacgaggggacccagga
ttcccaggagagagagggagagaaggactcaagggtgaatcaggctacccaggaagcact
ggagtgaacggggttaaaggtggcccaggagatcttggccaagaaggaccagcaggaatc
cctggaaatgctggactgagagggttctctgggccaccagggcctccagggcagcctgga
tctgttggattcccaggagctcgtggaacagcaggaccaaaagggttccatggatttcca
ggtttaaatggtctgaatggcttgccgggcacaaaagggtctcctggaacaccaggtctg
agtgaagttggactgaaaggccctgcgggtctccctggtctgaagggtgaggaaggttct
ccaggcttgggtagaggagctgtaggattcccagggccaaaaggctcatcaggagacgtg
ggtcccccaggtcctgtgggactgcctggcttgccaggaactcctggagtttctcttcct
tctgatatacgtgggagacctggggatgctggccatccaggacttgatgggagttcaggt
cttccaggtcctccgggaccacgagggccccctggaccagcttttgaccaaggcgacaca
ggcaatccgggtttccctggtgttcctggcttgcaaggtggtaagggtgatgtgggacct
gctggtcccattggactccctggcgtatctggattcaaaggtgtcagaggcgagcctggt
cttatggggatgccaggtaaagatgggcctccaggggatcctggttaccctgggctgaaa
ggtgaaatgggacgccgaggtctccctggccaaccaggggctccaggtgtaaccccacag
gcagaagaaatcacagcccctgcaggcttaccaggtctgccagggattgatggtgttcct
ggctttgacggagatcctggattccagggcccggttggaaagccaggtgcaaagggcctg
ccaggcagatctggtttgaaaggacgtgacggtttacctggatcacccggcatagctggt
gacccgggacctttgggtgctccaggacctcagggatttgaaggtgccgctggaaagcca
ggcgcgctcggcttgccgggaatgcctggtcggagcatgggggtcgggtacaccttggtg
aagcacagccagtcagaccaagtcccgccttgtcctgttggcatgaacaagctctgggat
ggctacagcttgttgtacgtggaggggcaggaaaaatcacacaaccaggatctcggtttt
gctggctcttgtttgccccgcttcagcactatgccttttatttactgcaacatcaatgaa
gtgtgctactatgccagccgaaacgacaagtcctactggctgtccaccaccgctcccatc
cccatgatgccagtgagcagcaatcagatcccacagtacatcagtcgttgctccgtgtgc
gaagcaccatcccaggccgtggctgtgcacagccaggatatcaccatcccacagtgtccc
cttggttggcgcagcctctggataggatactccttcctaatgcacacagcagctggtgcc
gagggtggaggtcagtccctcgtctcacctggttcttgcctggaggatttccgtgctacg
cccttcattgaatgcaatggtgccagaggaacgtgccactactttgcaaacaaatacagc
ttctggctgaccactgttgagcagtcgcagcagtttgttggtgctcctccctccgaaact
ctgaaagcaggacagcttcggacgagggtcagccgctgccaagtgtgcatgaagaacttg
taa

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