Tympanuchus pallidicinctus (lesser prairie-chicken): 128075834
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Entry
128075834 CDS
T08967
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04382
Cornified envelope formation
tpai04510
Focal adhesion
tpai04512
ECM-receptor interaction
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128075834 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128075834 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128075834 (COL4A5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128075834 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpai04147
]
128075834 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
tpai00536
]
128075834 (COL4A5)
Exosome [BR:
tpai04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128075834 (COL4A5)
Glycosaminoglycan binding proteins [BR:
tpai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128075834 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128075834
NCBI-ProteinID:
XP_052528889
LinkDB
All DBs
Position
Unknown
AA seq
1689 aa
AA seq
DB search
MEWRWRSRSLAVGCVVLLLLGCWGPREAAAAACHGCTSLTKCDCSGVKGEKGERGFPGLE
GQPGLPGFPGPEGPPGPRGAKGDDGLPGPIGPKGIRGPPGLPGFPGTPGLPGLPGQDGPP
GPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGEPGEIITSLLPGHKGDQGFP
GLPGIPGPPGPIGIPGPVGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQG
PPGPPGQIGEQKRPNDIEFQKGDQGIPGDPGPPGLPGPQGPPGLPGGIKGEKGEQGEPGK
RGKPGKDGEPGQPGRDGLPGGPGVNGVPGRDGEKGEKGDTGPPGPPGSVITRPGIDATVG
PKGSKGLPGLPGAKGERGFSGRPGPPGLPGSPGITTVGPPGPPGLPGERGQKGDPGLPGV
SIPGQPGLDGPRGPPGPPGPPGPPAPSVPPGEGLCEQGPPGPPGIPGQQGFAGERGQKGD
QGDTCFNCIGTGISGPPGERGPPGPPGSPGSPGFPGPKGEKGLPGLTGLVGPPGFPGPPG
APGRPGPKGDPGDVLASPRMKGDKGEPGFPGPPGLPGIDGTPGRDGLPGLPGPKGEPGSV
AFKGEMGIPGDPGVPGLPGDKGLPGPPGFGPQGSPGEKGIQGVSGRPGPPGVPGPKGDPG
QTITEPGVPGPPGPPGRNGDPGLPGDPGQPGQRGLSGIPGAKGEPGIPGIGLPGPPGPKG
FPGTPGPPGAPGTPGRPGLDGPPGPPGFPGQKGDRGFGVPGPPGPPGPPGIKGVQGPKGD
PGFPGNPGLPGRAGFDGTPGPKGDPGPSGPPGLPGPPGIPGIGGQGPPGPPGPPGPVGPP
GLQGLPGEKGDPGPPGFDVPGPPGDQGTPGYPGPPGLPGPQGSPGPPGRDGIPGFPGAKG
EMGVMGAPGPPGPPGTPGRSGLPGLKGNNGLPGPPGPPGPLGQKGVKGEAGLPGPPGKVD
PKQLGAKGEKGEPGIPGIPGLSGQKGYQGLPGDPGPPGLSGPPGAPGLPGIKGDMGLPGQ
PGPTGPPGLKGAMGEMGLPGPPGSKGSQGIAGRPGQPGPAGFPGLKGEKGDPGLSSVGIP
GLPGPKGDLGLPGYPGSPGSKGVAGNPGLPGLPGSPGAKGEPGLPGFPGTPGIPGPKGIE
GPPGNPGLPGPPGPVGDTGRPGPPGPPGEKGQPGRDGIPGPAGQKGEPGLPGFGRPGPPG
LPGLSGQKGELGLPGPPGPPGLPGLKGEPGFQGFPGLQGPPGPPGLPGPPLEGPKGSPGP
PGVPGRPGSPGPEGPRGPPGSGGLKGEKGNPGQPGPPGLTGQKGDQGPPGRQGDPGRPGL
NGMKGDPGVPGVPGFPGMKGPTGPAGPAGLMGSQGLPGPPGPPGLPGTIGRSIVVKGDPG
PPGPPGLPGSKGPPGLAGPQGLPGPVGVPGDPGRDGLPGFDGPAGRKGERGLPGQPGSRG
IQGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTRDTPLCPQGTSRIYDGFSLLYVQGNE
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLTGQN
IQPFISRCVVCEAPAMVIAVHSQTIQIPSCPPGWDSLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVSEMFSKPQSETLKAGDLRTRIS
RCQVCMKKT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcggtggcggagtcgcagcctggccgtgggctgcgtggtgctgcttctgctg
ggctgctgggggccgcgggaggcggcggcggcggcttgccatgggtgtacatctctaacc
aaatgtgattgcagtggagttaaaggagaaaagggtgaaaggggattcccaggcttggaa
ggacagccaggtctgcccgggttcccaggcccagaagggcctcctggtcccagaggtgca
aagggtgatgatggacttccaggacctattggccccaagggaatcagaggtccgccaggg
cttccaggatttccaggaacaccaggacttcctggtttaccaggacaagatgggccacca
ggacctcagggtatcccaggctgcaatggaacgaagggagaacgtggattcccaggcagt
ccaggttttccaggtttacaagggcctcctggaccccctggtctgccaggtatgaagggc
gaaccaggtgaaataattacatccttgctgccaggacataagggtgaccaaggatttcca
ggtcttccagggatacctggtccacctggtcccataggaataccaggtccagttggtcct
ccagggcccccaggtttgacaggacctcctggtccaccagggctaccaggacctaagggt
aatatgggcttgaatttccaaggacctaaaggtgaaaaaggtgaacaaggtctccaagga
cctccagggccaccaggacaaattggagaacagaagagaccaaatgacattgagtttcag
aaaggagatcagggtattccaggtgatccagggccaccaggacttccagggccacaaggc
cctcctggtcttcccggtggcataaagggtgaaaaaggtgagcaaggagagccaggcaaa
agaggaaagccgggcaaagatggagaacctggtcagcctggtagggatggtttacctggt
ggacctggagtaaatggtgttccaggaagagatggtgaaaagggtgaaaaaggtgacact
ggtcctcctggtcctcctggaagtgtcattacaagaccaggcattgatgcaacagtagga
ccaaaaggtagcaaaggattgccaggactcccaggagccaaaggggagcgtggattctct
ggtaggccaggcccacctggcttgccaggctctccagggatcacaactgttggacctcct
ggcccacctggcttacctggtgagagagggcagaagggagatccaggtttacctggtgtt
tccattcctggacaaccaggacttgatggaccacggggacctccagggcctccaggtcct
ccaggaccacctgcaccgtctgttcctcctggtgaagggttatgtgagcagggtccacca
ggtcctccaggaattccagggcaacaaggctttgctggagagagaggccaaaaaggtgac
caaggagacacatgtttcaattgtataggaactggaatatctgggcctcctggtgagaga
ggaccaccaggacctccaggtagtccaggttctcctggttttcctgggccaaaaggtgaa
aaggggcttccaggattaactggccttgtagggccaccaggattccccgggccaccaggt
gctcctgggagacctggtcctaaaggagaccctggggatgtcttggcttcaccaagaatg
aaaggtgacaaaggagagcctggcttccctggacctccaggtcttcctggaatagatggc
actcctggacgagatggattgccaggtctgcctggccctaaaggggagcctggcagtgtt
gcattcaaaggagaaatgggaattccaggtgacccaggagtaccaggtcttcctggagac
aaagggcttcctggacctcctggtttcggtccacaaggttcacctggtgaaaagggcatc
caaggtgtatcaggtcgtccagggcctcctggagttcctggtccaaaaggtgaccctggt
cagactattacagaaccaggagttcctggtccccctggtcctccaggaagaaatggtgac
ccaggtcttccaggggatcctggtcagccaggtcagcgtggcttatcaggcatcccaggt
gcaaagggagagccaggtattcctggcattggacttccaggtccaccaggcccaaaaggt
ttcccagggactccaggcccacccggagctccaggaactccaggtcgccctggcctagat
ggacctccaggaccacctggtttcccaggccagaagggggatcgtggatttggagttcca
ggaccaccaggacccccaggaccaccaggcataaaaggagttcagggacctaaaggtgat
cctggcttcccaggaaaccctggacttccaggacgggcaggttttgatgggactccagga
ccaaaaggtgaccctggaccaagcggaccaccaggccttccaggcccaccaggcatccct
ggcattggaggccaagggccacctggacctccaggaccaccaggtcctgttggcccacca
gggttgcagggcctaccaggagagaaaggggatccaggtcctccaggcttcgatgttcct
ggtcctccgggtgaccaaggaaccccaggatatccaggaccccctggcctcccaggccct
cagggttcacctggtccacctggccgggatggaatacctggatttccaggtgccaaaggt
gagatgggcgtcatgggagcccctgggcctccagggcctccagggactcctggaagaagt
ggccttcctggcttgaaaggtaataatggattgcctggcccgccagggcctcctgggcca
ttaggacagaaaggtgtcaaaggtgaagcaggcctgccaggcccacctggaaaagttgat
ccaaagcagctaggagcaaaaggagaaaagggcgagccgggtattccaggtattcctggt
ttatcagggcagaaaggctatcaaggtctcccaggtgacccaggtccaccaggactgagt
ggtccaccaggtgcaccagggttgccaggcatcaaaggagacatggggcttcctgggcag
ccaggaccaacaggacctccagggctaaaaggtgccatgggagagatgggccttccaggt
cccccaggaagtaaaggcagccagggaatagcaggacgtccagggcagcctgggcctgct
ggatttcctggactgaaaggggagaaaggtgatcctggtctttcaagtgttggcattcct
ggtctgcctggaccaaagggtgatcttggtttgcctggatatccaggtagtccaggcagt
aaaggcgtagctggaaatcctggtttgcctggattgcctggcagtccaggtgcaaaagga
gagccgggccttcctggattcccaggaacaccaggaattccaggaccaaaaggtatcgaa
gggcctccaggtaaccctggtctgcctggaccacctgggccagtaggtgatactggtcgt
cctggccctcctggtcctcctggggagaaggggcagcctggtcgagatggtatccctgga
ccagctggtcagaagggtgaaccaggtctgccaggctttgggcgcccaggacctccggga
ctcccaggattatcagggcaaaaaggtgaactggggttacctggcccaccaggaccccct
ggacttccaggtctgaagggagaaccaggtttccaaggattccctggcctacagggtcca
ccaggtccaccaggattaccagggccacctctggaaggtcctaaaggtagccctggccca
ccaggcgttccaggaagaccaggttcaccaggcccagaaggtccacgagggccaccaggc
agtgggggactcaaaggggaaaaagggaatccaggacagcctggcccacctggcctgact
ggtcaaaagggagaccaaggaccacctggacgccagggagatcctggtcgtcctggtctc
aatggaatgaaaggtgaccccggggttccaggcgttccgggattcccaggtatgaagggt
cccactggacctgcaggacctgctggcctcatgggcagtcaagggctgccaggcccacca
ggtccaccaggtttaccaggtaccatcggacgaagcattgttgtcaaaggtgaccctggt
cctccagggcctccaggattgcctgggtcaaaagggccacctggactggcagggccacaa
ggattgccaggtccagttggtgttcctggtgacccagggcgagatggactccctggtttc
gatggcccagcaggacgtaaaggagagaggggtcttccaggccaaccaggttcacgagga
atacagggaccccctggtcctgatggcttacaaggcccacctgggcctcctggaacagct
tctgttgctcatggattccttataactcgtcacagccagactagggatacaccactatgt
ccacaaggaacttcaagaatatatgatggattctctcttttgtatgtgcaaggaaatgag
agagcacatggccaggacttgggtactgctgggagctgtcttagacgctttagcaccatg
cctttcatgttctgcaacatcaacaacgtttgtaattttgcatcaaggaacgactattcc
tactggctgtcaactccagagccaatgccgatgagcatggagccactgactgggcagaac
atccagccattcattagcagatgcgttgtgtgtgaagctcctgctatggtgatagctgtc
cacagtcagaccattcagattccttcgtgtcctccaggctgggactccctatggatcggt
tactctttcatgatgcacaccagtgctggagcagagggctctgggcaggccttggcatca
cctggatcctgtttagaagaattccgctcagctccatttattgagtgtcatggtcgtggc
acttgtaactactatgccaattcatacagtttctggctggcaactgtagaggtgtcagaa
atgttcagcaaacctcagtcagagacactgaaagctggagacttgaggacgcgtattagt
cgctgccaagtttgcatgaagaagacgtaa
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integrated database retrieval system
