Tympanuchus pallidicinctus (lesser prairie-chicken): 128076632
Help
Entry
128076632 CDS
T08967
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04510
Focal adhesion
tpai04512
ECM-receptor interaction
tpai04518
Integrin signaling
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128076632 (COL6A2)
04518 Integrin signaling
128076632 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128076632 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128076632 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpai04147
]
128076632 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
tpai00536
]
128076632 (COL6A2)
Exosome [BR:
tpai04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128076632 (COL6A2)
Glycosaminoglycan binding proteins [BR:
tpai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128076632 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
128076632 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
128076632
NCBI-ProteinID:
XP_052530489
LinkDB
All DBs
Position
Unknown
AA seq
1022 aa
AA seq
DB search
MSRRTAEMFHQAFLSTLLCVALVPLHAQFDDEPVTSCTEKTDCPISVYFVIDTSESIALQ
TVPIQSLVDQIKQFIPRFIEKLENEVYQNQVSITWMFGGLHYSDVVEIYSPLTRSKDTYL
TKLRAINYLGRGTFTDCAISNMTQQFQSQTARDVKFAVVITDGHVTGSPCGGMKMQAERA
RDMGIKLFAVAPSEDVYEQGLREIASPPHDLYRSNYTITPKDALHIDENTIERIIKAMKH
EAYAECYKMSCLEIAGPAGPKGYRGQKGAKGNMGEPGSPGLKGRQGDPGIEGPIGYPGPK
GVPGLKGEKGEIGSDGRRGAAGLAGRNGTDGQKGKLGRIGPPGCKGDRGDKGPDGYPGDA
GDQGERGDEGMKGDPGRPGRSGPPGPPGEKGSPGIPGNPGAQGPGGSKGRKGETGPPGPK
GEPGRRGDPGTKGSKGGPGTKGERGDPGPEGPRGLPGEVGNKGARGDQGLPGPRGPTGAV
GEPGNIGSRGDPGDLGPRGDAGPPGPKGDRGRPGFSYPGPRGPQGDKGEKGQPGPKGGRG
ELGPKGTQGTKGEKGEPGDPGPRGEPGSRGPTGEAGPEGTPGPPGDPGLTDCDVMTYVRE
TCGCCDCEKRCGALDIMFVIDSSESIGYTNFTLEKNFVVNVVSRLGSIAKDPKSETGARV
GVVQYSHEGTFEAIKLDDERINSLSSFKEAVKRLEWIAGGTWTPSALQFAYNKLIKESRR
EKAQVFAVVITDGRYDPRDDDKNLGALCGRDVLVNTIGIGDIFDQPEQSETLVSIACNEP
QRVQKMRLFSDLVAEEFIDKMEDMLCPDPQIVCPELPCQTELAVAQCTQRPVDIVFLLDG
SERIGEQNFHRAHHFVEQVAQQLTLARRNDDNMNARIALLQYGSEREQDVVFPLTYNLTE
ISNALAQIKYLDSSSNIGSAIIHAINNIVLSPGNGQRVARRNAELSFVFITDGITGSKNL
EEAINSMKKQDVMPTVVALGSDVDMDVLLKLGLGDRAAIFREKDYESLSQPSFFDRFIRW
IC
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaagaactgctgagatgttccaccaagcctttctatccacccttctttgcgtg
gctctagttccactccacgctcagtttgatgatgaacctgttacctcctgtacagaaaag
acggattgccccatcagcgtgtactttgtcattgacacctcggagagcattgctctgcag
actgtgcctatccagagcctcgtggaccaaataaagcagtttatccctcggttcattgaa
aaattggagaatgaggtgtaccagaaccaagtctccatcacttggatgtttggaggactt
cattactcagatgtggtggaaatttacagccctttaacgagaagcaaggacacgtacctc
accaagctgcgtgccattaactaccttggccgaggcaccttcacggactgtgctatctcc
aacatgacacagcagttccagagccagacggcccgggatgtgaagtttgcggtggtcatc
accgacggccacgtcaccggcagcccctgtggggggatgaagatgcaggctgagagggca
cgcgacatggggatcaagctctttgccgtggcccccagtgaggacgtctacgagcagggc
ctgcgggagatcgccagcccaccgcacgacctgtaccgcagcaactacaccatcacgccg
aaagacgccctgcacattgatgagaacaccatcgagaggataatcaaagcgatgaaacat
gaagcctatgctgagtgctacaagatgagctgcctggagattgcaggtccagctggtccc
aaggggtaccgagggcaaaagggtgcaaagggaaacatgggtgaaccaggctcccctgga
ctgaagggacggcagggtgatccaggtattgaaggtccaattggataccccggtcctaag
ggtgttccagggctgaaaggagaaaagggcgagattggatccgatggacggaggggtgca
gctggtttggcaggcaggaatggcaccgatggacagaagggcaagctggggagaattgga
ccgccaggctgcaagggggatcgtggtgacaagggccctgatggctacccaggagatgca
ggagaccaaggtgaaagaggagacgaaggcatgaagggagatcctggccggcctggtcgc
agtggaccccctggacctccaggagaaaaagggagcccgggaattcctggcaaccctgga
gctcaaggacctggtggaagcaaaggaagaaaaggtgaaacaggacctcctggacccaaa
ggagagcctggtcgacgtggagatccaggaacgaaaggcagcaaaggcggtccaggcacc
aagggagaaagaggagatcctggtccagaaggtccccgtggcttgccgggagaggttgga
aacaaaggagcaaggggagaccaaggactgccaggaccacgaggccctacgggtgctgtg
ggagagccaggcaacataggatcacgtggggaccctggggacttgggcccaagaggtgat
gctggaccgccgggtccaaagggtgacagaggcaggcctggcttcagctatcctggaccc
agaggaccgcagggtgacaagggtgagaaggggcagccagggcccaagggaggaaggggt
gagcttggaccaaaaggaacacaaggaacaaaaggagagaagggagaaccgggtgatcct
ggcccaagaggtgaacctggatcccgaggcccaactggtgaagcaggcccagaggggacc
cctggcccaccgggagatccgggcctgactgactgcgacgtgatgacctacgtgcgagag
acatgtggatgctgtgactgtgagaagcgctgcggtgccctggatatcatgtttgtcata
gacagctcagaaagtattggttacaccaacttcactctggagaaaaattttgttgtgaac
gtggtcagccggctgggctccatcgccaaggaccccaaatcagagacaggtgcccgtgtt
ggggtggttcagtacagtcacgaggggacctttgaagccatcaaacttgatgatgagcgc
atcaattcactgtcgagcttcaaggaagcagtgaagcgcctggagtggattgctggaggc
acctggacaccttctgctcttcaatttgcttacaataagctcatcaaagaaagccgtcga
gagaaggcccaggtgtttgctgtagtgatcacagatggacgctacgaccctcgggatgat
gacaagaacctaggggctctttgtggcagagatgtgctcgtcaacaccattggcatcggg
gatatatttgatcagccagagcagagcgagaccctggtctccattgcctgcaatgaaccc
cagcgagtccagaagatgaggctcttctcagaccttgtggcggaggaattcattgacaag
atggaggacatgctctgcccagatccacagatcgtctgccctgagctgccctgtcagaca
gagcttgcagtagcccagtgcacacagcgtcccgttgacattgtcttcttgctcgatggc
tctgaaagaattggggagcagaatttccacagggcacaccactttgtggagcaggttgcc
caacagcttacactggccaggagaaacgacgacaacatgaatgcgcggattgcgctgctg
cagtacggcagtgagagagagcaggatgtggtcttcccactcacctacaacctgaccgaa
atctccaacgccctggctcagatcaagtacctggactcatcctccaacattggatcggcc
atcatacatgccatcaacaacattgtgctcagcccaggaaacggtcagcgagttgctcgg
cgcaatgctgaactctccttcgtcttcatcactgatggcatcacgggaagcaagaacctt
gaggaggccatcaattccatgaagaagcaagacgtcatgcccacagtagtggctcttggg
agtgacgtagacatggatgtcctgttaaagcttggccttggagatcgggccgccatcttc
cgggagaaggactatgaaagcctctcccagccgagcttctttgacaggttcattaggtgg
atatgttag
DBGET
integrated database retrieval system
