Tympanuchus pallidicinctus (lesser prairie-chicken): 128076662
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Entry
128076662 CDS
T08967
Symbol
ERCC3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03022
Basal transcription factors
tpai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128076662 (ERCC3)
09124 Replication and repair
03420 Nucleotide excision repair
128076662 (ERCC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpai03021
]
128076662 (ERCC3)
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128076662 (ERCC3)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
128076662 (ERCC3)
Transcription machinery [BR:
tpai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128076662 (ERCC3)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128076662 (ERCC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
AAA_2
DUF2605
Motif
Other DBs
NCBI-GeneID:
128076662
NCBI-ProteinID:
XP_052530528
LinkDB
All DBs
Position
Unknown
AA seq
780 aa
AA seq
DB search
MGRKERDKKKSKKRHYEDEDEEEDDAPGKDSQEAVPSAAGKQVEDSGAKLDEYGAKDYRL
QMPLKADNASRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSL
YAAVSVGLQTSDITEYLQKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKRNRYFVESTHPD
VIQQLLQDHVIKDCRLRNAEGEETELITETFTSKSAISKSSESSFGPSTSQEADVQNKPD
VPADLYEFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIQLDYPLLAEYDFRNDSVN
PDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLV
LGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIDCSIAISTYSMLGHTTKRSWEA
ERVMEWLKSREWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFL
IGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRA
CQFLIKFHERRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKIN
TIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLV
SQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELSFSSKEEQQQLLQKVLQASDLD
AEEEVVAGEYGSKSVQMSRRAGTMSSMSGADDAVYMEYHSSRSKASSNKHIHPLFKRFRK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgggcaggaaggagcgggacaagaagaagtccaagaagcggcactacgaggacgaggac
gaggaggaggatgacgctcccgggaaggactcgcaggaggccgtgccctcggcggcgggg
aagcaggtggaggacagcggcgccaagctggacgagtacggcgccaaggactaccggctg
cagatgccgctgaaggccgacaacgcctcgcggccgctctgggtggctcctgatggccat
attttcctggaagcgttttctcctgtttacaaatatgcacaggattttttggttgccatt
gctgaacctgtgtgcagaccgacccacatccacgagtacaaactgactgcttactccctg
tatgccgctgtcagcgtcggcctgcagaccagtgatatcacagagtacctgcagaaactg
agcaagaccggtgtgccagagggaatcattcagttcatcaagctgtgtaccgtcagctat
gggaaggtgaagctggtgctgaaacgcaacaggtattttgtggaaagcacccatcctgat
gtcattcagcaactcctgcaagaccacgttattaaagactgtcgcctgagaaatgctgaa
ggtgaagaaacagagctcattacagagacattcacaagtaaatcagcgatttccaagtcc
agtgagagcagctttggtccatcgacatcacaagaagcagatgttcaaaacaagccggat
gtcccagctgacttatatgagttttatgagcagatggacaaagatgaggaggaggaggaa
gaaacacagacagtatcttttgaagtcaagcaggagatgattgaagaactccagaagcgt
tgtatccagctggactacccattgctggcagaatatgatttcagaaatgattctgtgaat
cctgatattaatatagatctgaaacctacagctgtcctcagaccctatcaagagaaaagc
ctgaggaagatgtttggaaatgggcgagccagatctggtgttattgtcttgccgtgtggt
gctggcaagtctctagttggagtgacagctgcgtgtaccgtgcgcaagaggtgcctggtc
ctgggtaattctgcagtgtctgtggagcagtggaaagcgcagttcaagatgtggtccacc
atcgacgacagtcagatctgtcgcttcacctctgatgccaaagataagcccattgattgc
tctattgctatcagcacgtattccatgttgggacacacgaccaagagatcctgggaagca
gaaagagtgatggagtggcttaaaagtcgagaatggggccttatgatactcgatgaagta
catactatccctgcaaaaatgttcagacgtgtgctcactatcgtacaagctcattgtaaa
ctgggactgactgctaccctggtcagagaagatgataaaattgttgatcttaacttcctg
attggaccaaagctttatgaggccaactggatggagctgcagaacagtggctacattgct
aaagtccagtgtgctgaggtttggtgcccaatgtcacctgaattttatagagaatacgta
gcaatcaaaacaaagaaacggatactgctgtacaccatgaacccaaataagttcagagct
tgccagttcctgattaagtttcatgagcggcggaatgataaaatcattgtttttgctgac
aacgtgtttgcactgaaggagtacgcaatcagacttgggaaaccgtacatatatggtccc
actgcacaaggagaaagaatgcaaattctacaaaacttcaagcacaatccaaaaatcaac
actattttcatttcaaaggtgggtgacacgtcctttgatctgcctgaagccaatgttctg
attcagatttcatcccacggtggatctcgaagacaggaggctcaaaggctggggcgagta
ctgagagccaaaaaaggcatggttgcagaggaatacaatgcctttttttattctcttgta
tcccaagacactcaggaaatggcatattcaaccaagcgacaacggtttcttgtagatcaa
ggctatagcttcaaggtaataacaaagcttgcaggcatggaggaggaagagctttcattt
tcgtccaaagaagaacagcagcagcttcttcagaaagtcctacaagcatctgacctagat
gctgaggaggaagtagttgctggagaatatggttcaaagtcagttcagatgtcacgccgt
gcaggcacaatgagctctatgtcaggagcagatgatgcagtttatatggaatatcactca
tctcggagtaaggcatcttcaaataagcacatccacccgctatttaagcgcttccggaaa
tga
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integrated database retrieval system
