Tympanuchus pallidicinctus (lesser prairie-chicken): 128076727
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Entry
128076727 CDS
T08967
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpai04147
]
128076727 (COL18A1)
00535 Proteoglycans [BR:
tpai00535
]
128076727 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
tpai00536
]
128076727 (COL18A1)
Exosome [BR:
tpai04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128076727 (COL18A1)
Proteoglycans [BR:
tpai00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
128076727 (COL18A1)
Glycosaminoglycan binding proteins [BR:
tpai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128076727 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
128076727
NCBI-ProteinID:
XP_052530709
LinkDB
All DBs
Position
Unknown
AA seq
1503 aa
AA seq
DB search
MRALRAPRWGRAPASAPEPLRLPSRGARFPLPMAVLHLGLWLLLASCCFSSCDAQLLDWI
WGSPKTTGTPTAPSTAEISPTLSTPLSSAAAGDVATTQRHREPSTAAPTGQESAESTDGP
EQGDGSTVGITVPTSTARTAAPPRSTPPTRSPTETPRPLGTGNPNTTELPRQQEGTGGSP
QRPAAARPENLSSEVSLLELIGDPPPEGIVKIYGHENRPGYVFGPNANTGQVARYHLPSP
FYRDFSLLFHIQPTTPRAGVLFAITDSTQSIIYVGVKLSDLQMGKQQIIFYYTEPGSQSS
YAAATFTVPTLLNQWANFAISVEEDEVILYLDCEEHERVRFERSPDEMELEEGAGLFVGQ
AGGADPDKYQGVIADLRLRGDPRAAEYHCEEEDDTEASGDFGSGAEDRHRPSGKDKGIPG
LLDAVPVTSPPVVEGGGTRSSVGSPQQAERTRVEERLQVSTGGTGPKGEKGEKGERGLKG
DSGTSGILGPGTAKGEKGEKGELGIKGSAGFGYPGSKGQKGEPGEPGPPGTLSRHTDGVS
LEQVTGPPGPTGPPGKDGAPGRDGEPGDPGEDGKPGEMGPQGFPGTPGESGQKGEKGDPG
VGPRGPPGPPGPPGPPGPSSKQDGLTFIDMEGSGFGGDLETLRGPRGPPGPPGPPGVPGL
PGEPGRFGMNSTDLPGPPGLPGRDGTPGPPGPEGPLGPPGKDGMPGPPGPKGEQGDVGDL
GLPGAPGPKGSKGEAGPAGPPGETGLAGLPGPVGPRGQPGPPGPPGPPGPGYEAGFGDME
GSGLPLATGSPGPRGPSGPQGVPGLPGIKGEVGSLGQPGPPGPKGDAGVPGVDGRPGLEG
FPGPQGPKGNRGSPGEKGERGQDGVGLPGPPGPPGPPGQVIYISSEDRPLAALPGPEGRP
GHAGFPGPVGPKGDPGSPGIQGAPGMKGEKGEPGVIISPDGTIVAANMKGQKGEPGLQGP
MGPSGPHGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPVDIGGMLSLRGPPGPPGPPGPPG
PPGSVVYDSNNGFSDASRPAFPGFHQFPGQKGEKGDVGAPGPPGQFPYDLSRFSASLRGD
KGEAGPKGEKGEPGGSTLYGPSVTGPPGPQGYPGPPGPKGDSIVGPPGPPGPQGPPGIGY
EGRQGPPGPPGPPGPPSFPGPHRQAISIPGPPGPPGPPGPPGTSGTSLGLRAMPTYQAML
SAAHELPEGGLIFLTDRQELYVRLRGGFRRVLLEEHTLVPSSALDNEVYDKLPSIHYGGA
QQPVHPLRNHNPPPTARPWRGDEVVANQHRLPQPPLLQQHELLNSYYIHRWPDPAPVAAH
VHQDFQPALHLVALNTPLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIV
RRADRTSVPIVNLRDEVLFSNWEALFTGSEAPLRAGARILSFDGRDILQDSAWPQKSIWH
GSDAKGRRLPESYCEAWRTDERDTSGQASSLSSGKLLEQSASSCQHAFVVLCIENSFMTA
AKK
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcgctgcgggcacctcgctggggccgagctcctgcctctgcccccgagcccctc
cgtttgccaagccggggggctcgctttcccctccccatggctgtgctccacctggggctt
tggctgctgctggcttcctgctgcttctcctcttgcgacgcgcagcttctcgactggatt
tggggcagcccgaaaaccacggggacccccacagcgccaagcactgcagagatttcaccc
accctgagcacacctctgagctcagcagcagcaggggatgtggccaccacgcagcggcac
cgggagcccagcacggcagcacctacaggacaggagagcgctgagagcacagatggcccc
gagcagggggacgggagcaccgtggggatcacggtgccaaccagcacggcacggactgcc
gctccccctcgcagtacaccacccacccgcagccccaccgagactccacggcccctggga
acggggaaccccaatacgacggagctgccccggcagcaggaggggacagggggttccccg
cagaggccagcagccgcccgtccagagaacttgagcagtgaggtcagcctcctggagctg
attggagacccgccgccggaggggatcgtcaaaatctacggccatgagaacagacctggc
tatgtctttggacccaatgccaacacaggccaggtggcccggtaccacctgcccagcccc
ttctaccgagacttttctctcctctttcacatccagcccaccaccccgcgggccggcgtg
ctctttgccatcacagactccacgcagagcatcatctacgtgggtgttaagctctcagac
ttgcagatgggcaagcagcagatcatcttctactacactgagccgggctctcagagctcc
tacgcggctgccaccttcaccgtgcccaccctgctcaaccagtgggcaaactttgctatc
agcgtggaggaggatgaagtcatcctctacctggactgcgaggagcacgagcgggtccgc
tttgagcgctccccggatgagatggaactggaagaaggtgccgggctctttgttggtcag
gctggaggggctgacccagataaataccagggtgtgattgccgacctgaggctgcgaggg
gatccgcgggcggccgagtaccattgcgaagaggaggatgacaccgaggcatctggagat
ttcggcagcggggcagaggacaggcaccgtccctcggggaaggataagggcatcccaggg
ctgctggatgctgtccctgtcacctccccgcctgtggtggagggcggtgggacaaggagc
agtgtgggatccccccagcaggcagaaaggaccagagtggaggagaggctgcaggtctcc
acaggaggcactggccccaaaggtgaaaaaggggagaaaggtgaacgtggcctgaagggg
gactcggggaccagtggcatcttgggcccaggcactgccaagggcgagaagggggagaaa
ggtgaattgggcatcaagggcagcgctggttttggctaccctggctccaagggccagaaa
ggtgagcctggagagcctggcccccctggcactctctcacggcatactgatggcgtgtcg
ctggagcaagtcactggcccccctggccccactggccccccagggaaggatggggcccct
ggcagggacggcgaacctggtgatcccggcgaggacggcaaacctggtgagatggggccc
caagggtttccggggacaccaggagagtctgggcagaagggagagaagggtgaccctggt
gtggggccaaggggccccccggggccaccgggtccccccggacctccaggaccctcctcc
aagcaggacgggctgacattcattgacatggaaggctctgggtttggtggtgacctggag
accctgcggggcccacgagggccacctggtcctccaggtcccccaggtgtgcctggcttg
ccaggggagccaggaaggtttgggatgaacagcacagacctgccaggaccaccagggctg
ccaggcagagatggaactcctgggcccccagggccagagggtcctctgggtcctcctgga
aaagatgggatgcctggaccgccagggcccaaaggagagcagggtgatgtgggcgacctt
ggtctccccggagcaccaggacccaagggcagtaagggagaagcaggaccagcaggtccc
ccaggagagactggcttggctggcctccctgggccagttggaccccgagggcagccaggg
cccccagggcccccaggtccaccagggccggggtacgaggctggatttggtgacatggag
ggctctgggctgccactcgccaccggctcccctggaccacgtggccccagtggaccacag
ggtgtgccaggactgccggggatcaagggtgaggtgggcagcctcgggcagcctggccct
ccaggcccaaagggggatgctggtgtgcctggtgtagatggccgccctggcctggagggc
ttccctggaccgcagggtccgaaaggcaaccgtggcagccctggtgagaagggtgagcga
ggccaagatggcgtggggctgccaggcccccctggcccaccgggtccccccggacaggtc
atctacatctcaagtgaggataggcctttggcagctctgccgggcccagagggcagacca
ggacatgctggtttcccgggcccagtgggaccgaagggggatccaggatcaccaggcatc
caaggtgcaccagggatgaagggagagaagggagagcctggcgtcatcatcagcccggat
gggaccattgttgctgccaacatgaaaggacagaagggggagcctgggctgcaaggaccg
atgggcccatctggcccccatgggcgagcagggatgaagggagaaatcggctttccaggc
agacctggacgtcctggcatgaatgggctgaagggtgagaagggcgacccagtggatatc
ggtggtatgctgagcttgcggggtcctcctggccccccaggtccccccggccctcccggg
ccacctggcagtgtggtctatgacagtaacaatggcttcagcgatgccagccgtcccgcc
ttcccaggttttcaccagtttccaggtcaaaagggagagaaaggagatgtgggtgccccg
gggcccccaggccagttcccctacgacctgagccggttcagtgcaagcctgcggggtgac
aagggagaggcgggtcccaaaggagagaagggcgagccaggtggttccacactctatggc
cccagtgtcactgggccaccagggccccagggctacccaggtccaccgggtcccaaaggg
gacagcattgttgggccaccggggcctcctggaccacagggaccccctggcattggctac
gaagggcggcaaggccccccaggccctcccggcccccccgggccgccctctttcccaggt
ccccacagacaagcgatcagcatccctggcccccctggaccaccaggcccccctgggcca
ccaggcaccagcggaacatctctggggctgcgtgccatgcccacgtaccaggcgatgctg
agtgctgcacacgagctgcctgagggaggactcatcttcctgactgaccggcaggagctc
tacgtgcgcctgcgtgggggcttccgcagagtgctgctggaggagcacaccctggtcccc
agctcggcactggacaatgaggtatacgacaagctgcccagcattcactacggaggggcc
cagcaacccgtgcatcccctgcgcaaccacaaccccccgcccactgcccggccctggcgt
ggggatgaggtggtggccaaccagcaccgcctgccccagccacccctgctgcagcagcac
gagctcctcaacagctattacatccaccgctggccggatccagcacccgtggctgcccac
gtgcaccaggacttccagcctgctctgcacctggtggccctgaacaccccgctgagcggc
ggcatgcgtggcattcgtggcgctgacttccagtgcttccagcaagcccggcaggtcggg
ctggccggcaccttccgtgccttcctctcctcccgcctgcaggacctgtacagcatcgtg
cgcagggccgaccgcacctctgtgcccatcgtcaacctccgggacgaggtgcttttcagt
aactgggaggccctcttcaccggcagtgaggcaccgctgagggctggagcccgcatcctc
tcctttgatggccgggacatcctgcaggactcggcgtggccacagaagagcatctggcat
ggttcggatgccaagggccgtcgcctgcccgagagctactgtgaggcatggcggacggac
gagcgtgataccagcgggcaggcttcctcgctgagctcaggcaagctcctggagcagtca
gccagcagctgtcagcatgcctttgtcgtcctctgcattgagaacagcttcatgactgcc
gccaaaaaatga
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integrated database retrieval system
