Tympanuchus pallidicinctus (lesser prairie-chicken): 128076849
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Entry
128076849 CDS
T08967
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128076849 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128076849 (BARD1)
04121 Ubiquitin system [BR:
tpai04121
]
128076849 (BARD1)
03036 Chromosome and associated proteins [BR:
tpai03036
]
128076849 (BARD1)
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128076849 (BARD1)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
128076849 (BARD1)
Ubiquitin system [BR:
tpai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
128076849 (BARD1)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
128076849 (BARD1)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
128076849 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_2
zf-RING_5
zf-RING_UBOX
ANK_LRRK2
NIBRIN_BRCT_II
zf-C3HC4_4
RTT107_BRCT_5
Prok-RING_4
zf-RING_10
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
128076849
NCBI-ProteinID:
XP_052531061
LinkDB
All DBs
Position
Unknown
AA seq
807 aa
AA seq
DB search
MCANGRAALGACAVVAGGEFGVAAAMREALRGRSGNTPAQGGQPGPVASMAGPWAHTRAA
LEGLERALSCSLCAGVLREPVSLGGCEHVFCLSCMGDHVGKGCPVCHVPAWVQDVQINRQ
LDDMVQLCSKLRRLLGAGTSDSTESTSTPMCSNLGESSKKGQIKMWLSPRSRKIRCVVNK
NQPKPKSNDPCQDPSSVYHFFPSPVHEKPSKPTKKQTQRQSKKMKKKRLADVNKVWGLEK
PEQKGGVEEKASKEKRVTICSEPLVLCTPEADSPKEALQQEPVKEADSTRNLEEVEVTPE
VKSSKEEDNDEAVCPERVNKEKNCAAEKLPSIESEAMPLKRGREQSKLPDTSQSKRRRSE
RNLNRNSGSQTSCSEDLSQDCLIPQVTEPKTPVQVCGSVMKTRSSAARSAPSLPESPSTP
SALKACNQVGPPESPSVFKSPASNTIARRNFKGETLLHIASIKGDLAAVEELLKNGADPN
VKDNAGWTPLHEACNHGHQEVVELLLQHKALVNSTGYQNDSPLHDAAKNGHVSIVELLLL
HGASRDAVNIFGLRPVDYAESEKMKSVLMLPVKNESFSFSQPSESPSQPRDGPLGILGSS
LSSKQQKLLNQLATVLKARRCTEFNSTVTHVVIPDTPMPRTVKCMMAVLTGCWVLKFEWV
QACLQSTVREQEEKYEIQGGPRRGRLNREQLLPKLFDGCYFYFLGSFKSHQKSDLVELIK
AGGGQILVRQPKPDSDVTQTINTVAYHAESASDQRFCTQYVIYDASSKFKPERIGQGKVW
FAPSSWIVDCIMSFQLLPVKRKSLSHN
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcgaacgggcgcgcagcgcttggcgcctgcgcagtggtggcgggcggggaattc
ggagtggcggcggcgatgcgtgaggcgctgcgcggccgctcgggcaacacgccggcccag
ggcggccagcccggccccgtcgcctccatggcggggccgtgggcgcacacccgagcagcg
ctggaggggctggagagggcgctgagctgctccctctgtgccggtgtgttgcgggagccc
gtgtctctggggggctgcgagcacgtcttctgtctatcttgcatgggcgaccatgttggc
aaagggtgcccggtgtgccacgtgccagcctgggtgcaagacgtgcagataaaccgtcag
ctggatgacatggtccagctctgcagcaaactgcggcgtctcctgggtgcaggcacctca
gattcaacagaatctacatctacaccaatgtgctcgaacttaggagaaagcagtaagaag
gggcaaataaaaatgtggttgagcccaagaagtaggaagattcgatgtgtcgtgaacaag
aatcagcccaagcctaaaagtaatgacccttgtcaagacccgtcttcagtttatcatttc
tttccttcccctgttcatgagaagccctccaaaccaacaaaaaagcaaacccagaggcag
agtaagaagatgaagaaaaaacgcctagcagacgtgaacaaagtgtggggtttagagaag
cctgagcaaaaaggaggggttgaggagaaggcttccaaggaaaagcgtgtgaccatttgc
agtgagcctctagtcctgtgcactccggaagcagatagccccaaagaggcacttcaacag
gaacctgtaaaggaagctgactctaccagaaacttggaagaagtggaagtaactccagag
gtgaaatcctcaaaggaggaggataatgatgaggctgtctgtcctgaacgagtcaacaag
gaaaaaaactgtgctgcagagaaattgccatcaatagaaagcgaagcaatgcctttgaaa
cgtggaagggagcaatcaaaacttccagatacttctcagtctaaaagacgaagaagtgag
aggaaccttaacaggaattcaggcagtcagacttcttgctcagaggacttgtctcaggat
tgccttatcccccaagtgaccgaacccaagacacctgttcaggtctgtggcagtgtaatg
aagacgagaagctctgcagcaagaagtgctccttcacttccagaatctccctccactcca
tctgctttgaaggcttgtaatcaagtaggaccaccagagagtccttctgtgttcaagtcc
cctgctagtaacacaattgcaagaagaaatttcaaaggggagactttgcttcatattgct
tccatcaagggtgacttagcagctgttgaagagctgctgaaaaatggagcagatcccaat
gttaaggacaatgctggctggacaccactgcacgaggcatgtaaccacgggcatcaagag
gtggtggagctgttgctacaacacaaagcactggtgaattctacgggctatcagaacgat
tcgccccttcatgatgctgccaagaatgggcacgtgagcattgttgagctgctgcttctg
cacggtgcctcccgtgatgcagttaatatatttggtttgcggcctgtggactatgcagag
agtgaaaagatgaagtctgtgctaatgttaccagtcaagaatgaatcattttcatttagc
cagccctctgagagcccaagccagcctagagatggacctcttggtatcctggggagcagt
ctgagttcaaaacaacagaaactgctgaaccagctagcaacagttctgaaggctcgaagg
tgcactgaatttaacagcacagtaacccacgttgttattcctgatactccaatgccaagg
accgttaaatgtatgatggctgttctgactggatgttgggtcctgaagtttgagtgggta
caagcctgtctacaaagcacagttcgagaacaagaagagaagtatgaaatccaaggtggc
ccacgaagaggccggctcaacagagaacagctgctgcctaagctgtttgatggatgctac
ttctatttcttgggatcattcaaaagtcaccagaagagcgatcttgtggagctgatcaaa
gcaggaggaggacaaatcctggttaggcagcccaaaccagacagcgacgtgacacagacg
atcaacacggtggcataccatgcagaatctgcttctgaccagagattttgcactcagtat
gtcatctatgatgcatcttctaaattcaaaccggagagaattggtcaaggcaaagtctgg
tttgctccctccagctggattgtagactgcataatgtcatttcagctgctgcctgtaaag
cgaaagtccctgtctcacaactaa
DBGET
integrated database retrieval system
