Tympanuchus pallidicinctus (lesser prairie-chicken): 128076945
Help
Entry
128076945 CDS
T08967
Symbol
IFIH1
Name
(RefSeq) LOW QUALITY PROTEIN: interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04622
RIG-I-like receptor signaling pathway
tpai05164
Influenza A
tpai05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128076945 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
128076945 (IFIH1)
05168 Herpes simplex virus 1 infection
128076945 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tpai04054
]
128076945 (IFIH1)
Enzymes [BR:
tpai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128076945 (IFIH1)
Pattern recognition receptors [BR:
tpai04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128076945 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
DEAD
Helicase_C
CARD
SWI2_SNF2
SNF2-rel_dom
DUF3638
DUF7219
Fin
DUF6487
AAA_11
Motif
Other DBs
NCBI-GeneID:
128076945
NCBI-ProteinID:
XP_052531464
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MLGARERGSLRTAAVELATPAPSAAPAAPAPGRSRAXVYSSAMSEECRDERFLYMISCFR
PRLKRCIRVQPVLDWLPSLSAEEKEKVRTAALQRGEVEGAEELLRAVERGPRDRGWYTEF
LLALKKGGCDLAACYVNPSQLPSPREEDDHDLCVHLVQLLHGTLVDNMQTRQVAAKCLEL
GIFQEEDLVGIETVTDSRGNRDGARELLSRIVQKKDWFSQFLVALRETQHESLADDLSGN
TGGTENKENELKNNTSKETEDASQHGRAVTEDLKQQENLDDSFVRESSVLETSVGKNSVV
SESLGAVGDASVSNLNENLGQNSPTSDSGEDEAEGRASPEPDLTLRDYQMEVAKPALNGE
NIIICLPTGSGKTRVAVYITKDHLDKKKKASEPAKVIVLVNKVPLVEQHLRKEFNPFLKR
WYQVIGLSGDSELKISFPEVVKRNDVIICTAQILENSLLNATEEDEGVHLSDFSLIIIDE
CHHTQKEGVYNNIMRRYLKDKIKNRKQAKENKPLIPQPQILGLTASPGVGGAKTKPKAEE
HILKICANLDACRIMTVKEHASQLKNQVKDPFKKTVIADDKRKDPFRERVIEIMQDIQKY
CQLYPKSEFGSQPYEQWVIREERKAAKEEKRKERVCAEHLKKYNDALQINDTIRMVDAYN
HLNNFYKELKRKKTAGSDDDEEPLVSKEDETDEFLMGLFHAKKKQLKELARKPEYDNEKL
MKLRNTLMEEFTKTEESRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHYLIGAGHNSE
TKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR
ARADESTYALVASSGSGAVEREDVNIFRENMMYKAIQRVQQMPPEEYLNKIQDFQLQSIM
EKQMKTKRDQRKTYKKNPSLITFLCKNCHKLICSGEDIQVIENMHHVSVKKDFQHFYHTR
ENRTLQDKHADYQANVEIICKDCGQAWGNMMVYRGLDLPCLKIRNFVVAFEDKKTTKEIF
KKWGELPIRFPNFDYATHCPSSDED
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgttaggtgcccgggaacggggcagcctgagaacagccgccgtggagctggcgactccg
gctccttcggccgcccctgcagcccccgctcccggcagaagcagagccnnagtctacagc
tcagcgatgtcggaagagtgccgagacgagcgctttctttacatgatttcctgcttcagg
ccgcggctgaagcgctgcatccgagtgcagccggtgctggactggctgccctcgctgagc
gcagaggagaaggaaaaggtgcggacggcggcgttgcagcgcggcgaggtggagggggcc
gaggagctgctgcgcgcagtggaacgcggcccccgcgaccgcggctggtacactgagttc
ctactggcgctgaagaaaggaggctgcgacctggccgcttgctacgtgaaccccagccag
ctgccctcgccccgggaggaggacgaccacgacctctgcgtgcacctggtgcagctgctg
cacggcacgctggtggataacatgcagaccagacaggtggctgcgaagtgtctggagctg
ggtatctttcaggaggaggacctggttgggattgagactgttactgacagtcgtgggaac
agagatggtgcaagggagctgttgagcagaatagtgcagaagaaggactggttctctcag
tttttggttgctctacgagaaacccaacatgaaagtcttgcagatgatttaagtggaaat
acaggaggaacagagaataaagaaaatgagttgaagaacaatacaagcaaagaaacagaa
gatgcaagccaacatggacgtgctgtaacggaggatttgaaacagcaagaaaatttggat
gacagttttgtcagagagagcagtgtattagaaacttctgttggaaagaactctgtagtt
tcagaatcacttggcgctgtaggagatgcaagtgtcagtaacttgaatgaaaacctggga
cagaacagcccgaccagtgattcaggtgaagatgaagcagagggcagagcttcacctgag
ccagatctcaccctgagagattaccagatggaagttgcaaaaccagcactgaatggggag
aatattataatatgtctccctacaggcagtggcaagaccagagtggctgtttacattacc
aaagatcacttggataagaagaaaaaagcatcagagccagcaaaagttatagtacttgtt
aataaggtgccgttagtggaacagcatttacgaaaggagtttaatccattcctgaaacgc
tggtatcaagttattggtttaagtggtgattctgagctgaaaatctcatttcctgaagtt
gtcaaaagaaatgatgtcatcatttgtacagcacagatcctggagaattcactgctaaat
gccactgaagaagatgaaggtgtccacttgtcagatttttcactcattattattgatgag
tgccatcacactcaaaaggaaggtgtttacaacaatatcatgcgacgttacttaaaagat
aagatcaagaacagaaagcaggcaaaagaaaacaaacctttgattccacagcctcagatt
ctgggacttacagcctcacctggagtcggcggtgcaaaaactaaaccgaaagctgaagaa
catattctgaaaatctgtgccaatcttgatgcatgcagaataatgactgttaaagagcat
gcctctcaactgaagaaccaggtgaaggatccatttaagaaaactgtgattgcagatgac
aaaagaaaggatccatttagagaaagagttattgagatcatgcaagatattcaaaaatat
tgccagctctatccaaaatccgagtttggatcacagccgtatgaacagtgggtgattagg
gaagagagaaaagctgcaaaagaagaaaaacgcaaggaacgtgtctgtgcagaacacttg
aagaaatataatgatgcactgcaaatcaatgatactattcgaatggttgatgcatacaat
cacctaaataacttttacaaggagctaaaaaggaagaagacagcagggagtgatgatgat
gaagaaccactagtatcaaaagaggatgaaacagatgaatttttaatgggtttatttcat
gcaaaaaagaaacagctgaaagagttggctagaaagccagaatatgacaatgagaagcta
atgaagctccgaaacactttaatggaagagtttacaaagactgaagaatcaagagggatt
attttcacgaagactcgacaaagtgccttagctctataccactggattatggataaccct
aaatttgaagaagtgggaatcaaagctcattatcttattggtgctggacacaatagtgaa
actaaacctatgactcagaatgagcaaagggaagtcattgataaattccgaggtggaagt
ataaacttacttattgctactactgtagctgaggaaggcctagacatcaaagagtgtaac
attgttattcgctatggtctggtcaccaatgaaattgctatggtgcaggcccgtggtcga
gctcgagctgatgagagcacttatgcacttgtggcctcaagtggctcaggagctgttgaa
cgtgaagatgtaaatattttccgtgaaaatatgatgtataaggccattcaacgtgtccag
cagatgccaccagaagagtatttgaacaagattcaggacttccagttgcaaagtataatg
gaaaaacaaatgaagacaaagagagatcagcgtaagacatataagaaaaacccttcacta
ataacattcctgtgcaagaattgccacaagctgatatgttctggagaagatatacaagtt
attgaaaatatgcatcatgtcagtgtgaaaaaagatttccaacatttttaccatacaaga
gaaaacaggactttgcaagacaagcatgctgattaccaggcaaatgtggaaattatatgt
aaagattgtggacaagcctggggaaatatgatggtttatcgaggtcttgacctgccttgt
ctaaagattagaaattttgtggttgcttttgaagacaagaaaacaacaaaggagattttc
aagaaatggggagaactgcccatcaggtttcctaatttcgattatgcaactcattgtcct
tcaagtgatgaagattaa
DBGET
integrated database retrieval system
