Tympanuchus pallidicinctus (lesser prairie-chicken): 128076970
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Entry
128076970 CDS
T08967
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128076970 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpai03041
]
128076970 (SF3B1)
03036 Chromosome and associated proteins [BR:
tpai03036
]
128076970 (SF3B1)
Spliceosome [BR:
tpai03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128076970 (SF3B1)
Complex B
128076970 (SF3B1)
Complex C
U2 SnRNP specific factors
128076970 (SF3B1)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128076970 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
128076970
NCBI-ProteinID:
XP_052531533
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccatgaagatatcgaagcgcagatccgagaaatccaaggc
aaaaagcctgccctggatgaagcacaaggagtaggcctcgactccaccgggtattacgat
caggagatttatggtggcagcgacagcaggtttgcaggatacgtaacatccattgcagca
actgaattggaagacgatgatgatgattacccatctacaagtttgcttggccagaagaag
ccagggtaccatgctccagtggcactgcttaatgacataccgcagtcaactgaacagtat
gatccttttgcagagcaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
acaccagaccctaaaatgaatgccaggacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggagattaggcaacagctagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcatctcagccaccttcaaaacgcaagcggcgttgggatcaa
acagcagatcagactcctggtgcaacccccaaaaagttatccagttgggatcaagcagag
actcctgggcatacaccatctctgcgatgggatgaaactccaggccgtgcaaagggtagc
gaaactcccggtgccacccccggctcaaagatctgggatcccactcccagtcacacgcca
gcaggagctgcaacacctggccgggacacacctggccatgcaacaccaggccatggagga
gccacttccagcgcacgtaaaaatcggtgggatgaaactcctaaaacagaaagagatact
ccggggcatggcagtggatgggctgagactcctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcaagtaaaagaaagtcccgatgggatgaaacgcctgct
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaactcctacgccaggtcatatcatgagcatgactcctgaacagctg
caggcttggcgttgggagagggaaattgatgagagaaacaggccactttctgatgaagaa
ttggatgctatgttcccagaaggatataaggttcttcccccaccagctggttatgtacct
attcgtactccagcacgtaaacttacagcaactcccacaccgttgggtggtatgactgga
ttccacatgcagacagaggaccggactatgaagagtgtcaatgaccagccttctggcaat
cttccattcctaaagccagatgatatccagtactttgataagctgctggttgatgttgat
gaatcgacccttagtcctgaagagcagaaggagaggaagataatgaaattacttttgaaa
ataaagaatggcacccctcccatgagaaaggctgcattgagacaaattactgataaagct
cgggaatttggagctgggccattgtttaatcagattctaccattgctgatgtcaccaaca
ctggaggatcaggagcgccacttacttgtcaaagtcatagacagaattctgtacaaactg
gatgacctggtgcgaccatacgtacataagattcttgttgtcattgaaccactgctgatt
gatgaagactattatgccagagtagaaggcagagaaattatttcaaacttggctaaggct
gctggtttggcaacaatgatttctacgatgcgacctgatattgataacatggatgaatat
gtccgaaataccacagctcgagcctttgctgttgttgcctctgctttgggcattccttct
ctgttgcccttcttgaaagctgtctgtaaaagtaaaaaatcctggcaagcgaggcatact
ggcatcaagattgtgcagcaaattgctattcttatgggttgtgctatcttgcctcatctc
aggagcttggttgaaattattgagcatggtcttgtggatgagcagcagaaggttcgtacc
atcagtgctttggctattgctgctttagctgaggcagctactccctatggtattgagtca
tttgattctgttctgaagcccttgtggaagggtatacgtcagcacagaggaaagggcttg
gctgcctttttgaaggctattggttatctgatcccgctcatggatgctgagtatgcaaac
tattataccagagaagtcatgttaattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgttttgaaggtggtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacagagatcttgccaccttttttcaaacacttctggcagcacagaatg
gcattggacaggagaaattacagacagttggtggatacaacagtggagctggcaaataaa
gtgggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgaacag
tacagaaaaatggtcatggaaaccattgagaagataatgggaaatctgggcgcagcagac
attgatcataagctagaagagcaacttattgatggcatcttgtatgccttccaagaacag
accacagaggactctgtgatgctgaatggctttggcacagtggttaatgctcttggcaag
cgagtgaagccctacttgccgcagatctgcggtacggttctgtggcggttgaacaacaag
tcggccaaggtgcggcagcaggctgctgacctcatctcacgtactgcagtggtcatgaag
acttgtcaagaggaaaagctgatgggacatctgggtgttgtgctgtatgagtacctgggt
gaagaatatccggaagtactgggcagcatacttggagcactcaaggctattgttaatgtc
ataggtatgcacaagatgacaccacctatcaaagatctgctgccacggcttacgccaatt
ttgaagaacagacatgagaaagtacaggagaattgtattgatctggttgggcgcattgca
gacagaggtgcagaatatgtttctgcgagagaatggatgaggatctgttttgagctgctt
gagttattaaaagctcacaagaaagctattcgaagagccacagtaaatacttttggatat
attgcaaaagctattggacctcacgatgtcttggctacactgctgaataacttgaaagtg
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcgctcatgaatgaatacagagtcccagagctgaatgtc
cagaatggtgtgttaaaatctctttcttttctctttgaatacattggagaaatgggaaaa
gattatatttatgccgttacgcctttgctcgaagatgctttaatggacagagatcttgtg
cacagacaaacagccagtgctgtggtgcagcacatgtctcttggtgtttatgggtttggc
tgtgaagattctcttaatcatttgttgaactacgtatggcctaatgtgtttgaaacctct
ccgcacgtcatccaggcagtcatgggggctctggagggcctcagagttgctattggccct
tgccgaatgttgcagtattgtttgcagggtttgtttcaccctgcccggaaagtcagagac
gtttactggaagatttataattccatctacattggctcacaggatgctctgatagcacac
tatccaagaatctataacgatgaaaagaacacctatattcgttatgaacttgactacatc
ttataa
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