Tympanuchus pallidicinctus (lesser prairie-chicken): 128077194
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Entry
128077194 CDS
T08967
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128077194 (PMS1)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
128077194 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HATPase_c
HMG_box_2
HMG_WDHD1
HMG_box_5
IL5
Motif
Other DBs
NCBI-GeneID:
128077194
NCBI-ProteinID:
XP_052531970
LinkDB
All DBs
Position
Unknown
AA seq
919 aa
AA seq
DB search
MKQLSAETVRLLSSSQVITSVVNVVKELIENSLDACATTIDIRLENYGFDKIEVRDNGNG
IKVADVPVMAVKHYTSKINSSEDLERLTTYGFRGEALGSICCVSEVLVTTKTADDDISTQ
YVLDSNGHVTSQKPSHLGQGTTVTVLKLFKNLPVRKQFYSTNKKCKEELKKVQDLLIAYG
IIKPELRITFVHNKAAIWQKNKVSDHKMACMSVLGTAVMGSMVPFQHRCEDPEINLSGFL
PKAESDSSLTSLSSSERSFIFINDRPVHQKEILKLIRQYYSVLMQKDSTRLYPVFFLNIT
VPASAVDVNLTPDKTEVLLQYKDCVLSAVENVLKSLYGPLPTAASGEANKTDVTSEDTCV
HNAGQTDVVVNEKEPCGNNDLHAHTSFLSFSSDVQSCQAGKNTEICLNHQIFSDTVHSRL
ERKEASENDAFQEGSLRLLCEEEQSRQNTAGISSNSAPIDPGSKKDGGHLLSSDKVEEAL
VPEDLPEISADNWSMGNAFKNSSGDNLEPVKVLIPEAGGAINKQSERSDEQSHDPQIPNQ
TVKKRNVIDEKTGQVTGYDLIHGRTIRKSKSAFEHFIQEYRSKLFSENPRCSMKDILLKI
EELWKNLNEEEKHKYEIKAARDLERYNREASKAMQEKANRPVKETEKQKPRLKTPPPNQQ
KLDKMLHFRTDKKPKCNQPVKVVTVPFSLSSCRPQFQRHEKSDSDGHELCLIRCQSLPDI
WILATEKKLMLLNPYRLEEALLRKRLLMNHILPVEKLDKPVVLSDSLLGESHYMDALHKM
QKDYQTLNGSSYLSDPRLVANGFQIKVIEGASATESHMEIEGMANCLSYYGVSDLKEILN
AVVNKNAKEVYECRPLKVINYLEGEAVRLARQLPLHLSKEDVENTIYRMKQQLGRENKGC
VHGRPFFHHLTDIPEVNKP
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctgtcagcagaaactgttcgtctgctttcgagttctcaagtgattacatca
gttgtcaacgtggtgaaggagctgatagaaaactccttggatgcctgtgccacaactatt
gacattagactggagaattatgggtttgacaaaatagaagtaagagacaatggcaatggc
atcaaggttgctgatgttcctgttatggcagttaaacactacacctcaaaaataaactct
tctgaagatcttgaaaggttgacaacatatggtttccgcggggaagcgctgggatccatt
tgttgcgtatcagaggttttggtcacaacaaagacagctgatgatgatatcagcactcag
tatgttttggatagtaatgggcatgtaacttctcaaaagccttcccatcttggccaaggt
acaacggtaacagtcctcaagctgtttaagaatcttcctgtgagaaaacagttttactca
acaaataaaaaatgtaaggaagaactgaaaaaagtccaggacctcctgatagcatatggc
atcataaagccagaactgagaataacctttgtacataataaggcagctatttggcagaag
aacaaggtgtcagatcacaaaatggcctgcatgtcagttctgggaacagccgttatgggc
agtatggtaccttttcaacaccgctgcgaagatcctgagataaatctttctggatttctt
ccaaaggctgagtcagacagctctttgacaagtctctcaagctcagaacggagttttatt
tttataaatgatcgtccagttcatcagaaggaaatattaaagttaattcgacagtactac
agtgtgctgatgcaaaaggacagcacgcgcttataccctgtgttctttctgaatattact
gtacctgcctctgctgtggatgtgaacttaacacctgataaaactgaagttctgctgcag
tataaggactgtgtcttatctgctgttgaaaatgtgctgaaatctttgtatgggccacta
cctactgcagcctctggtgaagctaataaaacagatgttacctcagaagacacgtgtgtt
cataatgctggacaaacagatgtggttgttaatgaaaaggaaccatgtggaaacaatgat
ctacatgctcatacttcattcctttcattcagcagtgatgtgcaaagttgtcaagcagga
aaaaacacggagatctgtttaaaccatcagatattctctgatactgtacatagtcgccta
gaaagaaaagaggcttctgagaatgatgcctttcaagagggttccttacgtttattgtgt
gaggaggagcagagcagacaaaacacagctggtatttcaagtaacagtgctcctatagat
cctgggtctaaaaaagatggtggacaccttttgagttctgataaagttgaagaagcctta
gtccctgaagacttacctgaaatctctgctgataattggagtatgggaaatgcatttaaa
aactcctcaggagacaacctggaacctgttaaggttttaattcctgaagctggaggagca
attaataagcaaagtgagcgcagtgatgaacaaagccacgatccacaaatcccaaatcaa
actgtaaagaaaagaaatgtaatagatgagaaaacaggacaagtaacgggttatgactta
attcatggccgaacaataaggaaatcaaagtctgcatttgaacacttcatccaagaatat
cgttcaaagttattttctgaaaatccgaggtgtagcatgaaggacatcctattgaaaatt
gaagagctgtggaagaatttaaatgaagaagaaaagcacaagtatgaaataaaagctgct
agagacctggagcggtacaacagagaggctagcaaagccatgcaggaaaaagcaaacaga
cctgtaaaggagacagaaaaacagaagcccaggctgaagactcctccacccaaccagcag
aaacttgacaaaatgttgcattttcgaactgataagaaacccaagtgtaatcagcctgtg
aaagttgttacggtgcctttttctctgagttcctgtagacctcagtttcagaggcacgag
aagagtgattcagatggacacgagctttgcctgatccgttgccagagtcttcctgatatc
tggatacttgctactgaaaaaaagctaatgttgctgaatccatatagattggaagaagcc
ctgctgcgtaaaagattgctgatgaaccatatccttccagtagagaaactggacaagcca
gttgtgttatcagacagtcttcttggggaatctcactatatggatgctcttcataaaatg
cagaaggattaccagacactaaatggatcaagttatttgtcagacccaaggcttgtagca
aatggctttcagataaaagtgatagaaggtgcttcagctacagaaagccatatggaaata
gaaggaatggctaattgcctgtcctattatggtgtttctgatttgaaagaaattctgaat
gcagtagttaataaaaatgcaaaggaagtatatgaatgcagacctctcaaagtgataaac
tacttggagggagaagcagtgcgtttagctcggcagctgcccttacatttgtcaaaagaa
gatgtagaaaacacaatttacaggatgaagcaacagcttggaagggaaaataaaggctgt
gttcatggtcgtcctttttttcatcacttaacagatattccagaagttaacaagccataa
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