Tympanuchus pallidicinctus (lesser prairie-chicken): 128077371
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Entry
128077371 CDS
T08967
Symbol
SMARCAL1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1
KO
K14440
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128077371 (SMARCAL1)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128077371 (SMARCAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HARP
SNF2-rel_dom
Helicase_C
ResIII
ERCC3_RAD25_C
BSD
Motif
Other DBs
NCBI-GeneID:
128077371
NCBI-ProteinID:
XP_052532472
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MVKMSSGLTEEQKRRIEENRQKALARRAERLAAQQSGQLGITGPQVEEQSPDNRGSLKQD
NNHVRFISLPQQNPDTPAEQKSYLQKDYNNYTASQQMAGSQGEQQKNCSEDSKQASGIKQ
FPTSIPNSLSYSHQHYSDGQYGQQALINPGTFQRPKCYPALKNPTETSHPNLTGNRNSDG
VKDVQSQSKSAIKYTSSPSSTTLNSSEMVININRPETERQGGSGAFPSSGKMQKLTSPAV
ADSIKAASWKKANPVTKGKCVKHGEDRFQVEVGYNAELIALFKKIPTRKYDPTMKKWNFS
LEDYSSFRWFYLFLYCHFLQRLRDDREANESVEAASQLSSVILAPLEGENAVELSSGPHF
SSSGVDMVSLLNMCKNWKKPSAHVKGKCVLISRSRFEVDIGYSAEVVGVFKQMNSRNYDM
KTRKWNFLLEDYPKLMKVFQNLVSVEVEPLPGTVIQAFAAQIQNSTSQKMDFPDADLSVV
DSEIVTSLMPFQREGVNFAVLRNGRLLLADDMGLGKTVQAICIAAYYRKEWPLLVVTPSS
VRFTWAEAFHRWLPSLRPGSTNVIVTGKDSLTASLINIISFDLLSKMDKQLKSTFQVVII
DESHYLKNIKTARCRAAMALLKAARRVILLSGTPAMSRPAELYTQIAAVQPGFFPQFHTF
GLRYCDAKKMPWGWDYSGSSNLAELKILLEESIMIRRLKSDVLSQLPAKQRKMVVVAPEG
INAKTKAMLAAEAKKMAKGYESKQQEKEALLLFYNRTAEAKIHSVIEYILELLESGKDKF
LVFAHHKVMLDAIVEELEKKHFDYIRIDGSTPSAERQSLCQKFQFSEKQAVAVLSLTAAN
MGLTLSAADLVVFAELFWNPGVQILEGMGAGCCLESSWGGDVLIQAEDRAHRIGQTSSVN
VHYLVARGTADDFLWPMIQEKIKVLGEAGLSETNFSNTAESTNYYPKPDPKQKTIYELFQ
RTFSDSKDDTDVALLEAADACCEFDSDSAFQDAEERCSVSSLKKRRTEEFIKE
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagatgtcatctggccttacagaggagcaaaagagaagaattgaagagaaccgc
caaaaggctttggctaggagagcagagaggctagcagcccagcaaagtgggcaactgggg
atcactgggcctcaggtagaagaacagagtccagacaatcgaggaagcttgaagcaagat
aacaatcatgtcaggttcattagcctgccccaacagaatccagacactcctgcggagcag
aagagctatcttcagaaagattataataattacactgcaagccaacagatggctggttca
cagggagagcaacaaaagaattgttcagaggactcaaaacaagcaagtggcattaagcag
ttccctacgtcgatcccaaattctctgagttattcccatcaacattactcagatggacag
tatggacaacaagctttaattaatcctggtacattccagcggcccaagtgctacccagct
ttgaaaaaccctacagaaacatctcaccctaatttaactggtaacaggaactctgacggt
gttaaagatgtacaaagtcagagcaaatctgccataaaatatacttcatcaccaagtagc
accactctgaattcttcagaaatggtgataaatataaacagaccagaaacagaaagacag
gggggaagtggtgcctttccaagcagtggtaagatgcagaagctgaccagccctgctgtt
gcagactctatcaaagctgcctcttggaagaaagcaaatcctgtcacaaaaggaaaatgt
gtgaaacatggggaagaccgtttccaggttgaagtagggtataatgctgaacttattgct
ttgtttaagaagataccaaccagaaaatatgatcctactatgaaaaaatggaatttcagc
ctagaagattacagcagtttcagatggttttatctttttctctactgtcattttctgcaa
agattgagagatgacagagaggcaaacgagtcagtggaagcagcaagtcaactttcctct
gtgattctggcaccactggaaggagaaaatgcagttgagttgtcatcaggccctcatttc
agcagcagtggggttgatatggtatccctcttgaacatgtgcaagaactggaagaaaccc
tcagcccacgtcaaagggaagtgtgtgctgatctctcgctctcggtttgaggtcgatatt
gggtattctgcagaagtggttggagtgttcaaacagatgaattccagaaattatgatatg
aagaccagaaagtggaatttcttactggaggactatcccaaactgatgaaagtgttccag
aaccttgtgtctgtagaagtggagccacttcctgggacagtcatacaagcctttgctgct
caaatacagaattctacatcacagaagatggattttcctgatgctgacctttcagtagtg
gactccgaaattgtgacaagcctcatgccttttcagagggaaggtgtgaattttgcagtt
ttaagaaatggccgtttacttcttgcggatgacatgggcttgggcaagactgttcaggca
atctgcatcgctgcctactaccgaaaggagtggcccttgctggtggtgactccctcttct
gtgaggttcacgtgggcagaggcatttcacaggtggcttccatcattaagaccaggaagc
actaatgttatagtgactggcaaagacagcctaacagcaagtttgattaacatcatcagc
tttgacctactcagcaaaatggacaagcaactcaagagcactttccaagtagttattatt
gatgaatctcattacctaaagaacataaaaactgcgagatgccgagctgccatggctctc
cttaaggctgcgaggagagtgatcttactttcaggtacccctgccatgtcgcggcctgca
gagctctacacacagattgcagctgtccagccgggtttctttccacagttccacaccttt
gggctccgctactgtgatgcaaagaagatgccgtggggttgggactactctggatcatcc
aacttagctgaactgaaaattttgctggaagagtccatcatgatccgacgtcttaaatca
gatgtgctatcccagcttccagcaaagcaacgcaaaatggttgtggtagctcctgaaggc
attaatgcaaagaccaaagctatgttggcagctgaagctaagaaaatggccaaaggatat
gaaagtaaacaacaggagaaggaagctcttctccttttctacaacagaacagcagaagct
aaaatccactcagtcatagaatacatcttggagttactagaaagtgggaaagataaattc
ctggtgtttgctcatcataaagtaatgctggatgcaatagttgaagagctggagaagaaa
catttcgactacatccgcattgatggctctacaccatcagctgaacggcagtctttgtgc
cagaagttccagttctcagagaaacaagctgtggccgttctgtccctcactgctgcaaac
atgggcctgacgctgtctgctgcggacctggtggtgttcgcagagctcttctggaatcca
ggggtacaaatcctggaggggatgggtgctggatgctgcctggagagctcttggggagga
gatgttttgatccaagcagaagaccgggcgcatcgaattggacagaccagctctgttaat
gtccactacttggtggctagaggcacagcagacgacttcttatggccaatgattcaagag
aaaataaaagtgctgggagaagcagggctttcagaaaccaatttctccaatacagctgaa
tctactaattactatcctaagccggatccaaagcagaagaccatttacgaacttttccag
aggaccttctctgacagcaaagacgatactgatgttgcacttctggaagcagctgatgct
tgttgtgagtttgactctgacagtgcttttcaagatgcagaagagaggtgttcagtgagt
tccctcaaaaagcggcgtaccgaggagtttattaaagagtaa
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