Tympanuchus pallidicinctus (lesser prairie-chicken): 128077415
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Entry
128077415 CDS
T08967
Name
(RefSeq) LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG5-like
KO
K11125
protein SMG5
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128077415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128077415
03032 DNA replication proteins [BR:
tpai03032
]
128077415
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128077415
mRNA cycle factors
Common to processing body (P body) and stress granule
128077415
DNA replication proteins [BR:
tpai03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
128077415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
128077415
NCBI-ProteinID:
XP_052532495
LinkDB
All DBs
Position
Unknown
AA seq
1048 aa
AA seq
DB search
MSQGGGTGSESGEPEAKVLHTKRLYRAVVEAVHRLDLILGNKAAYQEVFKPENISLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSALECAYRTHLVAGI
GFYQHLLLYIQSHYQLELQCCIDWTHVTDPLMGCKKPVSASEKEMEWAQMACHRCLVYLG
DLARYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVDATYCYLRCI
QSEVSFEGASGNLKRLYDKAAKMYQQLKKCESRKLSPSRKRCKDIKRLLVSFMYLQSLLQ
PKSSSLDSELTSLCQSVLEDFNLCLFYLPSPPNLSSVSEDEEEYESGYSFLPDLLIFRMV
IICFMSVHSLRRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFRSDGAD
ELEPQEPLSATEKEGEAELPNHHPREEERKHDCKKSKKYSRLSCLRRRRHPQKADESDLS
EGFDSDSSQGSTKGSDGSDSGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDMEDEPGKE
GSERGQSGAREGLKNGVDGSGSGDCKNTSGSKMESADPAVNGPVSLSASDASIASNLQAM
STQLFQTKRCFRLAPTFSNILLKPSTEPPALKGSLTGKPCVNGDVEKPSSAEQDVSDSEE
SVLSAKSCRNERSLQEKLEIVSNEGLLLTVKVFLDWLRTNTDFIIMCAQSSQSLWNRLSV
LLNLLPSAADLQESGLELCKEVREVLSGAELPELRANLLLPEDVALRNLPPLKNAHRRLN
FEQDRPVFSAVEESVVRICCIRSFGHFVTRLQGSILQFNPELGIFISIAQSEQDSVVQQA
QAQFHMAAEEARRNRLMRDMAQLRLQVGRVGLEGSLQQPKAQSAMSPYLVLDAQALCQHL
AVVKQLAGSGRFIIIIPRAVIDSLDFLKKENPAARDGIRYLEAEFKKGNRYIRCQRDVGK
SFERHKXKRQDLDAWNLYKILDSCKQLTVSQSSGDDDTTGMVTIITGFQLEDPSALSAPM
QSAIQAAAGASVEVKNILEFYKQWKEMG
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggcggagggacgggcagcgagagcggagagcctgaggccaaagtgctgcac
accaagcggctgtaccgagcggtggtggaggccgtgcatcgcctggatctcatcctcggc
aacaaggcagcgtaccaggaggtgttcaagcccgagaacatcagcctgaggaacaagctg
cgggagctgtgcgtgaagctgatgttcttgcatcctgtggattatggcagaaaagcggaa
gagctgctctggagaaaggtttactatgaagttatccaactcatcaagacgaataagaag
cacatccacagccgcagcgccctggagtgcgcctaccgcactcacctggtggccggcatc
gggttctaccagcacctgctgctctacatccagtcccactaccagctggagctgcagtgc
tgcatcgactggacgcacgtgacggaccctctgatgggctgcaagaaacccgtgtctgcg
tcggagaaggagatggagtgggcgcagatggcgtgccaccgatgcctggtttacctgggg
gatctggcccgctaccagaacgagctggcaggtgtggacacggagctgctggccgagcgc
ttctactaccaggcgctgtctgtcgcgccgcagatcggcatgcccttcaatcagctgggg
acgctggctgggagcaaatactacaacgtggatgccacgtactgctacttacgctgcatt
caatctgaagtgtccttcgaaggcgcctctgggaacctgaagcggctttacgacaaagcg
gccaaaatgtaccagcagctgaagaagtgtgagagcaggaagctgtcgcccagcaggaag
cgctgcaaagacattaagaggctgctggtgagcttcatgtacctgcagagccttctgcag
cccaagagcagctctttggattctgagctgacatctctgtgccagtccgtgctggaggat
ttcaacctgtgcttgttctacctgccttcccctcccaacctgagctcagtgagcgaggac
gaggaggaatacgagagcggctactccttccttccagacctgctcatcttccgcatggtg
atcatctgcttcatgagcgtgcacagcctcaggcgtgcaggctccaagcagtacagcgcc
gccatcgctttcactctggccctcttctctcacctcatcaaccacgtcaacattcgcctg
caggcggagctggaggaaggggagaacccggtgccggcgttccgcagcgatggcgcagat
gagctggagccgcaggagcccctcagcgccacggagaaggaaggtgaggcagagctgccc
aatcaccaccccagagaggaggaacggaaacacgactgcaagaaaagcaagaaatactca
cggctttcctgcctgcgccgccgccggcacccgcagaaggcggatgagagcgacctgagc
gagggcttcgactccgattccagccagggctccacgaagggcagcgacggctctgacagc
ggctcggagaagagcgacgaggaagcagaggccgcttttgacgtggagacggactctgac
atgaacagccaggagtcgcggtctgacctggaggacatggaggacgagccgggcaaggag
ggcagcgagcgaggccagagcggggccagggagggcctaaaaaacggcgtggatggcagc
gggtcgggggactgcaagaacacgagcggctctaaaatggagagtgcggatccagccgta
aacgggccggtgtccctgagcgccagcgacgccagcatcgccagcaacctgcaggccatg
tccacgcagctcttccagaccaagcgctgtttccgcttggcccccaccttcagcaacatc
ctcctgaagcccagcaccgagccgcccgccttgaagggcagcttgactggcaagccctgc
gtcaacggcgatgtggagaagcccagctcagcagagcaggacgtgtctgactctgaggag
agcgtgttgagcgccaagtcgtgcaggaacgagagatccctgcaggagaagctggagatt
gtgagcaacgaggggctgctgctcaccgtcaaggtgttcctggactggctgaggacaaac
acggacttcatcatcatgtgtgctcagagctcccagagcctatggaacaggctgtccgtg
ctcctcaacctgctgccttctgctgccgacctgcaggagtcagggctggagctgtgcaag
gaggttcgcgaggtgctgagcggcgcggagctgccggagcttcgtgccaacctgctgctc
cccgaggacgtggccctgcgaaatctgccccccctgaagaacgcgcacaggaggctcaac
ttcgagcaggaccgccccgtcttctcagcagtggaggagtccgtcgttcggatctgctgc
atccggagcttcggccacttcgtcacgcggctgcagggcagcatcctgcagttcaacccg
gagctggggatcttcatcagcatagcgcagtcggagcaggacagcgtggtgcagcaggct
caggcccagttccacatggccgcagaggaggctcgtcggaaccggctgatgagagacatg
gctcagctccgcctgcaggtagggagggttgggctggagggcagcctgcagcagcccaag
gcgcagtcagccatgtctccatacctcgtgctggatgcgcaggcgctctgccagcacctg
gccgtggtcaagcagctggccggcagcgggaggttcatcatcatcatcccgcgggcagtg
atcgacagcttggatttcctcaagaaggagaacccggccgcccgggacggcatccgctac
ctggaggcggagtttaaaaagggaaaccggtacatccgttgtcagagggacgtcgggaag
agctttgagaggcacaaantgaagagacaagatttggatgcgtggaacctctataagatc
ctggacagctgcaagcagctgacggtgtcccagagcagcggcgacgacgacaccacaggg
atggtcaccatcatcacaggcttccagctggaggatcccagcgcgctctcagcgcccatg
cagtctgccatccaagcagcagccggcgccagcgtggaagtgaagaacatcctggagttc
tacaagcagtggaaagagatgggctga
DBGET
integrated database retrieval system
