Tympanuchus pallidicinctus (lesser prairie-chicken): 128077722
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Entry
128077722 CDS
T08967
Symbol
ERCC6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
128077722 (ERCC6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128077722 (ERCC6)
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128077722 (ERCC6)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128077722 (ERCC6)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
128077722 (ERCC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
TFIIF_beta
SesA
Motif
Other DBs
NCBI-GeneID:
128077722
NCBI-ProteinID:
XP_052533201
LinkDB
All DBs
Position
Unknown
AA seq
1501 aa
AA seq
DB search
MPHRKIMPTESSHLPDSIQEQDSITSVSNICPHNAEESGTEQENGIYDSDLGNCFGVHNS
DSKPSTSVAVPMEVPRRGQPLLHINRQQIQSVSYSAQAAELKGLGVDVYDQDVLEQGVLQ
QVDNAINEANKATKIADAEKEYQSVLDDLRSCTTSLKQIDKIIEQLSPQAANNKDINRKL
DSVKRQKYNKEQQLKKIKAKQKRLQAVLGGTEILDKVNEIEFEDDEVPGPSSLGSMLMPV
QETEWEELIRTGQMTPFGTKIPQKPEKKTRRLMLNEASDFEKYLADQAKLSSERKKLSLH
KRAKKKAQAKNVQCVAPTSATKEKRGKVLSKTDKRLKKHLKKLQKHALQVHSKAGIPKEK
KNLETTNLKPGQEDDSGESEYVPDEEQLEPAAVEEEEEQASSHAENDSDYELRNLSGKGK
YSVRRDSKDAENDVDYFPSSEEEEHTVGKRKVKRWRDDGDEDYYKQRLRKWQKERLKDKE
HPVAEELSDESDTEFEEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGK
TIQIIAFLAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILH
ETGSYTNKKVKLIREIASCHGILITSYSYIRLMQDNIHSYDWHYVILDEGHKIRNPNAAV
TLACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSN
ASPVQVKTAYKCACVLRDTINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRRVYQN
FIDSKEVYQILNGDMQVFSGLVALRKICNHPDLFSGGPKILKCLPDADMEEADQFGYWKR
SGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFVRDRNYSYLRMDGTTTIASRQPL
ITRYNEDKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQV
TVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLSSPDVSQGTE
TSAIFAGTGSDVQVPKHQLKRKLERPADDDDTLKDGLQLKKSNSPKYSKSSGSHLTSHVA
NSSKAIETSEEAKGNLETFDQKSYAKDIAQTATDINSVNKSKQESLERAGISLSQSLPGD
VESSENATVTEEEHEVANENVERDFSLLCGAAGSQEKQVDKTDDGQLDNNHYKRTSKTKH
RVDVLSHDSHKEKSRKKHHKDAKFEGERIPHLVKQKRYRKEGGEEKELDPKKNDDYVLEK
LFKKTGVHSVMKHDAIMEASSADYVLVEAEANRVAQDALRALKVSRQRCLGAASGVPTWT
GVSGLSGAPSGVKSRFGQKRNSMLLSSHSTCASPVKKRKDADTMKKENVKNSTNGHFDGK
SETGESSSVLDSSSLLAKMRARNHLILPQRTGNEGDENLHQAPAPAPGSTEYDELLVDVR
NFIAFQARVDGEASTQEILQEFESKLPAAQSCVFRELLRNLCTFHRSPNGEGVWRLKPEF
R
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgcctcacagaaaaataatgccaacagaaagcagccacctaccagacagtattcaagaa
caagactccattactagtgtaagcaatatttgcccccataatgctgaagaatcaggaact
gaacaagaaaatggcatttatgacagtgacctgggtaattgttttggagttcacaactct
gacagcaagccatccacttctgtggcagttcccatggaggtgcccagaagaggacaaccc
cttctgcatatcaacaggcagcaaattcagtccgtttcatatagtgcacaggctgctgag
ctcaaaggtttaggagttgatgtgtatgaccaggatgtattggagcaaggagttctccag
caagtagataatgcaattaatgaagctaacaaagcaacaaaaatagctgatgctgaaaaa
gaatatcagtcagtgctggatgacttaagatcatgtacaacatctctgaaacaaatagat
aaaattattgagcaactttcacctcaggctgccaacaacaaagatataaacagaaaatta
gattctgtaaaacggcaaaaatacaacaaggagcaacagctaaagaagatcaaagcaaag
cagaaacgtctccaagcagttctgggtggaactgagattcttgataaagtaaatgaaatt
gaatttgaggatgatgaagtgcctggtccatcatctcttggcagtatgcttatgcctgtt
caggaaacagagtgggaagagcttattcgtacaggccagatgaccccgtttggaactaaa
atacctcagaagccagagaagaaaacacgacgactaatgctaaatgaagcatctgatttt
gaaaagtatttagcagaccaggctaagctgtcatctgagagaaagaagttatcccttcac
aaaagagcaaagaagaaagcacaagccaaaaatgttcagtgtgtagctcccacatctgct
acaaaggaaaaaagaggtaaagttctgtcaaaaacagacaaacgtttaaaaaaacacttg
aagaaacttcagaagcatgcccttcaggttcattcaaaagcaggtattccaaaagaaaaa
aaaaatcttgagactacaaatctgaagcctggacaagaagatgatagtggagaatctgag
tatgtacctgacgaggaacaacttgagccagcagcagttgaagaggaagaagaacaggca
tcttcacatgctgaaaatgattctgattatgaactcaggaatttgtcagggaagggaaaa
tactcggtgaggcgggattctaaagatgctgaaaacgacgttgactactttccaagctct
gaggaggaggaacatacagtagggaagcgcaaagtaaaaagatggagagatgatggagat
gaagactattataagcagagactaaggaagtggcaaaaagaacgtttgaaggacaaagaa
catcctgtggctgaggaactttctgatgaaagcgacactgaatttgaagagggtttcaaa
gttccaggatttctcttcaaaaagctttttaagtaccagcagacaggtgttaggtggctc
tgggaattgcactgccagcaggcaggagggattctgggagatgagatgggattgggcaag
accatccagataattgccttcttggcaggtctgagctacagcaagatcaggactcgtggt
tcaaattacaggtaccagggactgggtccaacagtgattgtttgtccggctactgtgatg
catcagtgggtaaaagaattccacacatggtggcctccatttagggttgccattctccat
gaaactggttcttacaccaacaaaaaggtgaaactgattcgagaaattgcttcatgccat
ggaattttaattacgtcttattcatacattcgactgatgcaagataacatccacagctat
gactggcattatgtgattttggatgagggtcacaaaatccgaaatccaaatgctgcagtc
acacttgcatgcaagcagttccgcacaccccatcgcatcatcttgtctggttcccctatg
caaaataacttgaaggagctctggtccctctttgactttgtattcccagggaaactggga
acactacctgtgttcatggagcaattttccgttccgataaccatgggaggatactccaat
gcctctcctgtgcaggtaaaaactgcatacaaatgtgcatgtgtgctacgggacaccata
aacccttacctgctgcgaagaatgaaggctgatgttaaaatgagcctttcacttcctgat
aaaaatgaacaggtcctcttctgtcgtttgacagatgagcagcgtcgagtctatcaaaat
ttcatcgactctaaggaagtctaccagattctcaatggagacatgcaggttttctcagga
ctagtagctttgaggaagatttgcaaccaccctgacctcttctctggtggtcccaagatt
ttgaagtgcttaccagatgctgacatggaggaagcagatcagtttggatattggaaacgt
tctggaaaaatgatagtggtagagtccttgctgaaaatatggcacaagcaaggtcacaga
gtgttgtttttcactcagtcaaggcagatgttgcagatccttgaagtctttgttcgagac
agaaactattcctacctcaggatggatggcactacaaccatagcatccagacaacccctt
ataacaagatacaatgaggacaaatccatatttatttttcttctgacaactcgtgttggt
ggtattggagttaacttgactggtgctgacagggttattatttatgatcccgattggaat
cccagtacagacacacaggctcgtgaacgtgcttggagaataggtcaaaagaaacaagtg
actgtgtacagacttctcactgcaggtactattgaagagaagatataccacagacaaatc
ttcaagcagtttttaacaaacagagtgctgaaagaccctaagcaaaggcgctttttcaaa
tccaatgatctttatgagctattcactctgagcagcccagatgtgtctcaagggacagaa
acaagtgcaatttttgcaggtactggttcagatgttcaagtccccaaacaccagttgaaa
cggaaacttgagaggccagctgatgatgatgacactttgaaagatggtctgcaacttaaa
aaaagcaactcaccgaagtacagcaagtcatctggttcccacttaaccagccacgtggca
aattcttctaaagcaatagagaccagcgaggaagctaaaggaaatttggaaacttttgat
caaaagagctatgcaaaagatattgcacaaactgctacagacataaattcagtgaataaa
agcaagcaagaaagcttggaaagagctggtatatctctgtcccaatcattgccaggtgat
gtagagtcttcagagaatgccacggtgactgaagaagaacatgaagtggctaatgaaaat
gttgaaagagattttagccttctgtgtggtgcagctggctctcaggaaaagcaggttgat
aaaacagacgatgggcaattggataataatcattataaacgtacctcaaaaacaaagcac
agagtggatgtgctatcacatgacagccataaagagaagtctaggaagaaacatcacaaa
gatgccaagtttgaaggggagcgtattcctcacctggtgaaacaaaagcgctaccggaag
gagggcggtgaagagaaggagttggacccaaagaaaaatgacgattatgtcttggagaag
ctcttcaagaaaacaggggtacacagtgtaatgaagcatgatgccattatggaagcttcc
agtgcagattatgtgctggtagaagcagaagcaaacagagtggcacaagatgcactaaga
gccttaaaagtctctcgacagcgatgcttaggagctgcttctggtgtgccaacatggaca
ggtgtgagtggtctttcaggtgcaccatcaggagtaaagagtcggtttggtcaaaaaaga
aactctatgctgctttcttcacattccacttgtgcatcacctgtgaaaaagcgcaaggat
gcagatacaatgaagaaggaaaatgtgaagaatagtaccaatgggcactttgatggaaaa
tcagaaactggagaatcatctagtgtattagattcttcatcattattagctaagatgagg
gcgagaaaccaccttattttaccacaaaggacagggaacgagggagatgagaatcttcac
caagcaccagctccagccccaggttcaacagaatacgatgaattgctggtggatgtgcgg
aacttcattgcattccaggcccgtgtggatggtgaggcaagtactcaggaaatactgcag
gagtttgagtccaaactgcctgcagcacagtcatgtgtctttagagaactcctgcgcaat
ctctgcacctttcataggagcccaaatggtgaaggtgtctggaggctgaagccagaattc
cgctga
DBGET
integrated database retrieval system
